167 lines
5.0 KiB
Python
Raw Normal View History

# Copyright 2021 Collate
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Test Profiler behavior
"""
from unittest import TestCase
import pytest
import sqlalchemy.types
from sqlalchemy import Column, Integer, String, create_engine
from sqlalchemy.orm import declarative_base
from metadata.generated.schema.entity.data.table import ColumnProfile
from metadata.ingestion.source import sqa_types
from metadata.orm_profiler.metrics.core import add_props
from metadata.orm_profiler.metrics.registry import Metrics
from metadata.orm_profiler.profiler.core import MissingMetricException, Profiler
from metadata.orm_profiler.profiler.default import DefaultProfiler
from metadata.utils.connections import create_and_bind_session
Base = declarative_base()
class User(Base):
__tablename__ = "users"
id = Column(Integer, primary_key=True)
name = Column(String(256))
fullname = Column(String(256))
nickname = Column(String(256))
age = Column(Integer)
class ProfilerTest(TestCase):
"""
Run checks on different metrics
"""
engine = create_engine("sqlite+pysqlite:///:memory:", echo=True, future=True)
session = create_and_bind_session(engine)
@classmethod
def setUpClass(cls) -> None:
"""
Prepare Ingredients
"""
User.__table__.create(bind=cls.engine)
data = [
User(name="John", fullname="John Doe", nickname="johnny b goode", age=30),
User(name="Jane", fullname="Jone Doe", nickname=None, age=31),
]
cls.session.add_all(data)
cls.session.commit()
def test_default_profiler(self):
"""
Check our pre-cooked profiler
"""
simple = DefaultProfiler(session=self.session, table=User)
simple.execute()
profile = simple.get_profile()
assert profile.rowCount == 2
assert profile.columnCount == 5
age_profile = next(
iter(
[
col_profile
for col_profile in profile.columnProfile
if col_profile.name == "age"
]
),
None,
)
assert age_profile == ColumnProfile(
name="age",
valuesCount=2,
valuesPercentage=None,
validCount=None,
duplicateCount=None,
nullCount=0,
nullProportion=0.0,
uniqueCount=2,
uniqueProportion=1.0,
min=30.0,
max=31.0,
minLength=None,
maxLength=None,
mean=30.5,
sum=61.0,
stddev=0.25,
variance=None,
distinctCount=2.0,
distinctProportion=1.0,
# histogram=Histogram(
# boundaries=["30.0 to 30.25", "31.0 to 31.25"], frequencies=[1, 1]
# ),
)
def test_required_metrics(self):
"""
Check that we raise properly MissingMetricException
when not building the profiler with all the
required ingredients
"""
like = add_props(expression="J%")(Metrics.LIKE_COUNT.value)
count = Metrics.COUNT.value
like_ratio = Metrics.LIKE_RATIO.value
# This should run properly
Profiler(
like,
count,
like_ratio,
session=self.session,
table=User,
use_cols=[User.age],
)
with pytest.raises(MissingMetricException):
# We are missing ingredients here
Profiler(
like, like_ratio, session=self.session, table=User, use_cols=[User.age]
)
def test_skipped_types(self):
"""
Check that we are properly skipping computations for
not supported types
"""
class NotCompute(Base):
__tablename__ = "not_compute"
id = Column(Integer, primary_key=True)
null_col = Column(sqlalchemy.types.NULLTYPE)
array_col = Column(sqlalchemy.ARRAY(Integer, dimensions=2))
json_col = Column(sqlalchemy.JSON)
map_col = Column(sqa_types.SQAMap)
struct_col = Column(sqa_types.SQAStruct)
profiler = Profiler(
Metrics.COUNT.value,
session=self.session,
table=NotCompute,
use_cols=[
NotCompute.null_col,
NotCompute.array_col,
NotCompute.json_col,
NotCompute.map_col,
NotCompute.struct_col,
],
)
assert not profiler.column_results