2022-02-20 17:55:12 +01:00
|
|
|
# Copyright 2021 Collate
|
|
|
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
|
|
|
# you may not use this file except in compliance with the License.
|
|
|
|
|
# You may obtain a copy of the License at
|
|
|
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
|
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
|
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
|
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
|
|
|
# See the License for the specific language governing permissions and
|
|
|
|
|
# limitations under the License.
|
|
|
|
|
|
|
|
|
|
"""
|
|
|
|
|
Workflow definition for the ORM Profiler.
|
|
|
|
|
|
|
|
|
|
- How to specify the source
|
|
|
|
|
- How to specify the entities to run
|
|
|
|
|
- How to define metrics & tests
|
|
|
|
|
"""
|
|
|
|
|
import itertools
|
2022-04-05 14:32:45 +02:00
|
|
|
from typing import Iterable, List
|
2022-02-20 17:55:12 +01:00
|
|
|
|
|
|
|
|
import click
|
2022-04-05 14:32:45 +02:00
|
|
|
from pydantic import ValidationError
|
2022-02-20 17:55:12 +01:00
|
|
|
|
2022-04-05 14:32:45 +02:00
|
|
|
from metadata.config.common import WorkflowExecutionError
|
2022-04-21 17:53:29 +02:00
|
|
|
from metadata.config.workflow import get_processor, get_sink
|
2022-02-20 17:55:12 +01:00
|
|
|
from metadata.generated.schema.entity.data.database import Database
|
|
|
|
|
from metadata.generated.schema.entity.data.table import Table
|
2022-04-12 23:40:21 -07:00
|
|
|
from metadata.generated.schema.entity.services.connections.metadata.openMetadataConnection import (
|
|
|
|
|
OpenMetadataConnection,
|
|
|
|
|
)
|
2022-04-21 17:53:29 +02:00
|
|
|
from metadata.generated.schema.metadataIngestion.databaseServiceProfilerPipeline import (
|
|
|
|
|
DatabaseServiceProfilerPipeline,
|
2022-04-06 17:05:00 +02:00
|
|
|
)
|
2022-04-05 14:32:45 +02:00
|
|
|
from metadata.generated.schema.metadataIngestion.workflow import (
|
|
|
|
|
OpenMetadataWorkflowConfig,
|
|
|
|
|
)
|
2022-02-22 08:09:02 +01:00
|
|
|
from metadata.ingestion.api.processor import Processor
|
2022-02-20 17:55:12 +01:00
|
|
|
from metadata.ingestion.api.sink import Sink
|
|
|
|
|
from metadata.ingestion.ometa.ometa_api import OpenMetadata
|
2022-04-21 17:53:29 +02:00
|
|
|
from metadata.ingestion.source.sql_source import SQLSourceStatus
|
2022-03-02 16:46:28 +01:00
|
|
|
from metadata.orm_profiler.api.models import ProfilerProcessorConfig, ProfilerResponse
|
2022-02-20 17:55:12 +01:00
|
|
|
from metadata.orm_profiler.utils import logger
|
2022-04-22 11:30:59 +05:30
|
|
|
from metadata.utils.connections import (
|
|
|
|
|
create_and_bind_session,
|
|
|
|
|
get_connection,
|
|
|
|
|
test_connection,
|
|
|
|
|
)
|
2022-04-21 17:53:29 +02:00
|
|
|
from metadata.utils.filters import filter_by_fqn
|
2022-02-20 17:55:12 +01:00
|
|
|
|
|
|
|
|
logger = logger()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
class ProfilerWorkflow:
|
|
|
|
|
"""
|
|
|
|
|
Configure and run the ORM profiler
|
|
|
|
|
"""
|
|
|
|
|
|
2022-04-05 14:32:45 +02:00
|
|
|
config: OpenMetadataWorkflowConfig
|
2022-02-22 08:09:02 +01:00
|
|
|
processor: Processor
|
2022-02-20 17:55:12 +01:00
|
|
|
sink: Sink
|
|
|
|
|
metadata: OpenMetadata
|
|
|
|
|
|
2022-04-05 14:32:45 +02:00
|
|
|
def __init__(self, config: OpenMetadataWorkflowConfig):
|
2022-02-20 17:55:12 +01:00
|
|
|
self.config = config
|
2022-04-12 23:40:21 -07:00
|
|
|
self.metadata_config: OpenMetadataConnection = (
|
2022-04-05 14:32:45 +02:00
|
|
|
self.config.workflowConfig.openMetadataServerConfig
|
2022-02-20 17:55:12 +01:00
|
|
|
)
|
|
|
|
|
|
2022-04-21 17:53:29 +02:00
|
|
|
# Prepare the connection to the source service
|
|
|
|
|
# We don't need the whole Source class, as it is the OM Server
|
2022-04-22 11:30:59 +05:30
|
|
|
engine = get_connection(self.config.source.serviceConnection.__root__.config)
|
2022-04-21 17:53:29 +02:00
|
|
|
test_connection(engine)
|
2022-02-20 17:55:12 +01:00
|
|
|
|
|
|
|
|
# Init and type the source config
|
2022-04-21 17:53:29 +02:00
|
|
|
self.source_config: DatabaseServiceProfilerPipeline = (
|
2022-04-06 17:05:00 +02:00
|
|
|
self.config.source.sourceConfig.config
|
|
|
|
|
)
|
2022-02-20 17:55:12 +01:00
|
|
|
self.source_status = SQLSourceStatus()
|
|
|
|
|
|
2022-02-22 08:09:02 +01:00
|
|
|
self.processor = get_processor(
|
|
|
|
|
processor_type=self.config.processor.type, # orm-profiler
|
|
|
|
|
processor_config=self.config.processor or ProfilerProcessorConfig(),
|
|
|
|
|
metadata_config=self.metadata_config,
|
|
|
|
|
_from="orm_profiler",
|
|
|
|
|
# Pass the session as kwargs for the profiler
|
2022-04-21 17:53:29 +02:00
|
|
|
session=create_and_bind_session(engine),
|
2022-02-22 08:09:02 +01:00
|
|
|
)
|
|
|
|
|
|
2022-02-20 17:55:12 +01:00
|
|
|
if self.config.sink:
|
|
|
|
|
self.sink = get_sink(
|
|
|
|
|
sink_type=self.config.sink.type,
|
|
|
|
|
sink_config=self.config.sink,
|
|
|
|
|
metadata_config=self.metadata_config,
|
|
|
|
|
_from="orm_profiler",
|
|
|
|
|
)
|
|
|
|
|
|
|
|
|
|
# OpenMetadata client to fetch tables
|
|
|
|
|
self.metadata = OpenMetadata(self.metadata_config)
|
|
|
|
|
|
|
|
|
|
@classmethod
|
|
|
|
|
def create(cls, config_dict: dict) -> "ProfilerWorkflow":
|
|
|
|
|
"""
|
|
|
|
|
Parse a JSON (dict) and create the workflow
|
|
|
|
|
"""
|
2022-02-22 08:09:02 +01:00
|
|
|
try:
|
2022-04-05 14:32:45 +02:00
|
|
|
config = OpenMetadataWorkflowConfig.parse_obj(config_dict)
|
2022-02-22 08:09:02 +01:00
|
|
|
return cls(config)
|
|
|
|
|
except ValidationError as err:
|
|
|
|
|
logger.error("Error trying to parse the Profiler Workflow configuration")
|
2022-04-05 14:32:45 +02:00
|
|
|
raise err
|
2022-02-20 17:55:12 +01:00
|
|
|
|
|
|
|
|
def filter_entities(self, tables: List[Table]) -> Iterable[Table]:
|
|
|
|
|
"""
|
|
|
|
|
From a list of tables, apply the SQLSourceConfig
|
|
|
|
|
filter patterns.
|
|
|
|
|
|
|
|
|
|
We will update the status on the SQLSource Status.
|
|
|
|
|
"""
|
|
|
|
|
for table in tables:
|
|
|
|
|
|
2022-04-21 17:53:29 +02:00
|
|
|
if filter_by_fqn(
|
|
|
|
|
fqn_filter_pattern=self.source_config.fqnFilterPattern,
|
|
|
|
|
fqn=table.fullyQualifiedName.__root__,
|
2022-02-20 17:55:12 +01:00
|
|
|
):
|
|
|
|
|
self.source_status.filter(
|
2022-04-21 17:53:29 +02:00
|
|
|
table.fullyQualifiedName.__root__, "Schema pattern not allowed"
|
2022-02-20 17:55:12 +01:00
|
|
|
)
|
|
|
|
|
continue
|
|
|
|
|
|
2022-03-31 08:35:11 +02:00
|
|
|
self.source_status.scanned(table.fullyQualifiedName.__root__)
|
2022-02-20 17:55:12 +01:00
|
|
|
yield table
|
|
|
|
|
|
|
|
|
|
def list_entities(self) -> Iterable[Table]:
|
|
|
|
|
"""
|
|
|
|
|
List and filter OpenMetadata tables based on the
|
|
|
|
|
source configuration.
|
|
|
|
|
|
|
|
|
|
The listing will be based on the entities from the
|
|
|
|
|
informed service name in the source configuration.
|
|
|
|
|
|
|
|
|
|
Note that users can specify `table_filter_pattern` to
|
|
|
|
|
either be `includes` or `excludes`. This means
|
|
|
|
|
that we will either what is specified in `includes`
|
|
|
|
|
or we will use everything but the tables excluded.
|
|
|
|
|
|
|
|
|
|
Same with `schema_filter_pattern`.
|
|
|
|
|
"""
|
|
|
|
|
|
|
|
|
|
# First, get all the databases for the service:
|
|
|
|
|
all_dbs = self.metadata.list_entities(
|
|
|
|
|
entity=Database,
|
2022-04-08 15:58:10 +02:00
|
|
|
params={"service": self.config.source.serviceName},
|
2022-02-20 17:55:12 +01:00
|
|
|
)
|
|
|
|
|
|
|
|
|
|
# Then list all tables from each db.
|
|
|
|
|
# This returns a nested structure [[db1 tables], [db2 tables]...]
|
|
|
|
|
all_tables = [
|
|
|
|
|
self.metadata.list_entities(
|
|
|
|
|
entity=Table,
|
|
|
|
|
fields=[
|
2022-03-02 16:46:28 +01:00
|
|
|
"tableProfile",
|
|
|
|
|
"tests",
|
2022-02-20 17:55:12 +01:00
|
|
|
], # We will need it for window metrics to check past data
|
|
|
|
|
params={
|
2022-04-08 15:58:10 +02:00
|
|
|
"database": f"{self.config.source.serviceName}.{database.name.__root__}"
|
2022-02-20 17:55:12 +01:00
|
|
|
},
|
|
|
|
|
).entities
|
|
|
|
|
for database in all_dbs.entities
|
|
|
|
|
]
|
|
|
|
|
|
|
|
|
|
# Flatten the structure into a List[Table]
|
|
|
|
|
flat_tables = list(itertools.chain.from_iterable(all_tables))
|
|
|
|
|
|
|
|
|
|
yield from self.filter_entities(flat_tables)
|
|
|
|
|
|
|
|
|
|
def execute(self):
|
|
|
|
|
"""
|
|
|
|
|
Run the profiling and tests
|
|
|
|
|
"""
|
|
|
|
|
for entity in self.list_entities():
|
2022-03-02 16:46:28 +01:00
|
|
|
profile_and_tests: ProfilerResponse = self.processor.process(entity)
|
2022-02-24 08:03:50 +01:00
|
|
|
|
|
|
|
|
if hasattr(self, "sink"):
|
|
|
|
|
self.sink.write_record(profile_and_tests)
|
2022-02-20 17:55:12 +01:00
|
|
|
|
2022-02-22 08:09:02 +01:00
|
|
|
def print_status(self) -> int:
|
2022-02-20 17:55:12 +01:00
|
|
|
click.echo()
|
2022-02-22 08:09:02 +01:00
|
|
|
click.secho("Source Status:", bold=True)
|
|
|
|
|
click.echo(self.source_status.as_string())
|
|
|
|
|
click.secho("Processor Status:", bold=True)
|
|
|
|
|
click.echo(self.processor.get_status().as_string())
|
|
|
|
|
if hasattr(self, "sink"):
|
|
|
|
|
click.secho("Sink Status:", bold=True)
|
|
|
|
|
click.echo(self.sink.get_status().as_string())
|
|
|
|
|
click.echo()
|
|
|
|
|
|
|
|
|
|
if (
|
|
|
|
|
self.source_status.failures
|
|
|
|
|
or self.processor.get_status().failures
|
|
|
|
|
or (hasattr(self, "sink") and self.sink.get_status().failures)
|
|
|
|
|
):
|
|
|
|
|
click.secho("Workflow finished with failures", fg="bright_red", bold=True)
|
|
|
|
|
return 1
|
|
|
|
|
elif (
|
|
|
|
|
self.source_status.warnings
|
|
|
|
|
or self.processor.get_status().failures
|
|
|
|
|
or (hasattr(self, "sink") and self.sink.get_status().warnings)
|
|
|
|
|
):
|
|
|
|
|
click.secho("Workflow finished with warnings", fg="yellow", bold=True)
|
|
|
|
|
return 0
|
|
|
|
|
else:
|
|
|
|
|
click.secho("Workflow finished successfully", fg="green", bold=True)
|
|
|
|
|
return 0
|
|
|
|
|
|
|
|
|
|
def raise_from_status(self, raise_warnings=False):
|
2022-02-20 17:55:12 +01:00
|
|
|
"""
|
2022-02-22 08:09:02 +01:00
|
|
|
Check source, processor and sink status and raise if needed
|
|
|
|
|
|
|
|
|
|
Our profiler source will never log any failure, only filters,
|
|
|
|
|
as we are just picking up data from OM.
|
2022-02-20 17:55:12 +01:00
|
|
|
"""
|
|
|
|
|
|
2022-02-22 08:09:02 +01:00
|
|
|
if self.processor.get_status().failures:
|
|
|
|
|
raise WorkflowExecutionError(
|
|
|
|
|
"Processor reported errors", self.processor.get_status()
|
|
|
|
|
)
|
|
|
|
|
if hasattr(self, "sink") and self.sink.get_status().failures:
|
|
|
|
|
raise WorkflowExecutionError("Sink reported errors", self.sink.get_status())
|
|
|
|
|
|
|
|
|
|
if raise_warnings:
|
|
|
|
|
if self.source_status.warnings:
|
|
|
|
|
raise WorkflowExecutionError(
|
|
|
|
|
"Source reported warnings", self.source_status
|
|
|
|
|
)
|
|
|
|
|
if self.processor.get_status().warnings:
|
|
|
|
|
raise WorkflowExecutionError(
|
|
|
|
|
"Processor reported warnings", self.processor.get_status()
|
|
|
|
|
)
|
|
|
|
|
if hasattr(self, "sink") and self.sink.get_status().warnings:
|
|
|
|
|
raise WorkflowExecutionError(
|
|
|
|
|
"Sink reported warnings", self.sink.get_status()
|
|
|
|
|
)
|
2022-02-20 17:55:12 +01:00
|
|
|
|
|
|
|
|
def stop(self):
|
|
|
|
|
"""
|
|
|
|
|
Close all connections
|
|
|
|
|
"""
|
|
|
|
|
self.metadata.close()
|