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# Copyright 2021 Collate
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Population Standard deviation Metric definition
"""
# Keep SQA docs style defining custom constructs
# pylint: disable=consider-using-f-string,duplicate-code
Fixes #9301 - Refactor TestSuite and Remove Pandas from Base Requirements (#10244) * feat(testSuite): extracted out column test for SQA type * refactor(testSuite): extracted SQA column and table tests into their own classes * refactor(testSuite): Added pkutil namespace package style for test suite classes * refactor(testSuite): added dynamic importer function for test cases * refactor(testSuite): black formatting * refactor(testSuite): fixed linting issues * refactor(testSuite): refactor metrics for dataframe * refactor(testSuite): Added Mixins and base methods * refactor(testSuite): extrcated out get bound for floats * refactor(testSuite): Added pandas column test cases * refactor(testSuite): Deleted old column tests * refactor(testSuite): Added table tests for datalake * refactor(testSuite): Removed old tests definition * refactor(testSuite): changed registry to dynamic class inport * refactor(testSuite): renamed dl_fn to df_fn * refactor(testSuite): updated registry unit test * refactor(testSuite): updated import path to sqa like column * refactor(testSuite): cleaned up imports in old files * refactor(testSuite): harmonzied SQALikeColumn object to replicate SQA Column object * refactor(testSuite): linting * refactor(testSuite): linting * refactor(testSuite): raise expection on DQ exception * refactor(testSuite): linting * refactor(testSuite): removed pandas from base requirements * refactor(testSuite): Added __futur__ for py3.7 type hint * refactor(testSuite): added `df` to good-names * refactor(testSuite): renamed Handler to Validator * refactor(testSuite): Added test inheritance for column tests * refactor(testSuite): cleaned up column type check * refactor(testSuite): cleaned up typo * refactor(testSuite): extracted main table test logic into parent class * refactor(testSuite): linting * refactor(testSuite): linting fixes * refactor(testSuite): address doc string and linting issues
2023-02-22 09:42:34 +01:00
from typing import cast
from sqlalchemy import column
from sqlalchemy.ext.compiler import compiles
from sqlalchemy.sql.functions import FunctionElement
from metadata.profiler.metrics.core import CACHE, StaticMetric, _label
from metadata.profiler.orm.registry import Dialects, is_quantifiable
from metadata.utils.logger import profiler_logger
logger = profiler_logger()
class StdDevFn(FunctionElement):
name = __qualname__
inherit_cache = CACHE
@compiles(StdDevFn)
def _(element, compiler, **kw):
return "STDDEV_POP(%s)" % compiler.process(element.clauses, **kw)
@compiles(StdDevFn, Dialects.MSSQL)
def _(element, compiler, **kw):
return "STDEVP(%s)" % compiler.process(element.clauses, **kw)
@compiles(StdDevFn, Dialects.SQLite) # Needed for unit tests
def _(element, compiler, **kw):
"""
This actually returns the squared STD, but as
it is only required for tests we can live with it.
"""
proc = compiler.process(element.clauses, **kw)
return "AVG(%s * %s) - AVG(%s) * AVG(%s)" % ((proc,) * 4)
@compiles(StdDevFn, Dialects.ClickHouse)
def _(element, compiler, **kw):
"""Returns stdv for clickhouse database and handle empty tables.
If table is empty, clickhouse returns NaN.
"""
proc = compiler.process(element.clauses, **kw)
return "if(isNaN(stddevPop(%s)), null, stddevPop(%s))" % ((proc,) * 2)
class StdDev(StaticMetric):
"""
STD Metric
Given a column, return the Standard Deviation value.
"""
@classmethod
def name(cls):
return "stddev"
@property
def metric_type(self):
return float
@_label
def fn(self):
Fixes #9301 - Refactor TestSuite and Remove Pandas from Base Requirements (#10244) * feat(testSuite): extracted out column test for SQA type * refactor(testSuite): extracted SQA column and table tests into their own classes * refactor(testSuite): Added pkutil namespace package style for test suite classes * refactor(testSuite): added dynamic importer function for test cases * refactor(testSuite): black formatting * refactor(testSuite): fixed linting issues * refactor(testSuite): refactor metrics for dataframe * refactor(testSuite): Added Mixins and base methods * refactor(testSuite): extrcated out get bound for floats * refactor(testSuite): Added pandas column test cases * refactor(testSuite): Deleted old column tests * refactor(testSuite): Added table tests for datalake * refactor(testSuite): Removed old tests definition * refactor(testSuite): changed registry to dynamic class inport * refactor(testSuite): renamed dl_fn to df_fn * refactor(testSuite): updated registry unit test * refactor(testSuite): updated import path to sqa like column * refactor(testSuite): cleaned up imports in old files * refactor(testSuite): harmonzied SQALikeColumn object to replicate SQA Column object * refactor(testSuite): linting * refactor(testSuite): linting * refactor(testSuite): raise expection on DQ exception * refactor(testSuite): linting * refactor(testSuite): removed pandas from base requirements * refactor(testSuite): Added __futur__ for py3.7 type hint * refactor(testSuite): added `df` to good-names * refactor(testSuite): renamed Handler to Validator * refactor(testSuite): Added test inheritance for column tests * refactor(testSuite): cleaned up column type check * refactor(testSuite): cleaned up typo * refactor(testSuite): extracted main table test logic into parent class * refactor(testSuite): linting * refactor(testSuite): linting fixes * refactor(testSuite): address doc string and linting issues
2023-02-22 09:42:34 +01:00
"""sqlalchemy function"""
if is_quantifiable(self.col.type):
return StdDevFn(column(self.col.name))
logger.debug(
f"{self.col} has type {self.col.type}, which is not listed as quantifiable."
+ " We won't compute STDDEV for it."
)
return None
Fixes #9301 - Refactor TestSuite and Remove Pandas from Base Requirements (#10244) * feat(testSuite): extracted out column test for SQA type * refactor(testSuite): extracted SQA column and table tests into their own classes * refactor(testSuite): Added pkutil namespace package style for test suite classes * refactor(testSuite): added dynamic importer function for test cases * refactor(testSuite): black formatting * refactor(testSuite): fixed linting issues * refactor(testSuite): refactor metrics for dataframe * refactor(testSuite): Added Mixins and base methods * refactor(testSuite): extrcated out get bound for floats * refactor(testSuite): Added pandas column test cases * refactor(testSuite): Deleted old column tests * refactor(testSuite): Added table tests for datalake * refactor(testSuite): Removed old tests definition * refactor(testSuite): changed registry to dynamic class inport * refactor(testSuite): renamed dl_fn to df_fn * refactor(testSuite): updated registry unit test * refactor(testSuite): updated import path to sqa like column * refactor(testSuite): cleaned up imports in old files * refactor(testSuite): harmonzied SQALikeColumn object to replicate SQA Column object * refactor(testSuite): linting * refactor(testSuite): linting * refactor(testSuite): raise expection on DQ exception * refactor(testSuite): linting * refactor(testSuite): removed pandas from base requirements * refactor(testSuite): Added __futur__ for py3.7 type hint * refactor(testSuite): added `df` to good-names * refactor(testSuite): renamed Handler to Validator * refactor(testSuite): Added test inheritance for column tests * refactor(testSuite): cleaned up column type check * refactor(testSuite): cleaned up typo * refactor(testSuite): extracted main table test logic into parent class * refactor(testSuite): linting * refactor(testSuite): linting fixes * refactor(testSuite): address doc string and linting issues
2023-02-22 09:42:34 +01:00
def df_fn(self, df=None):
"""pandas function"""
from pandas import DataFrame # pylint: disable=import-outside-toplevel
df = cast(DataFrame, df)
if is_quantifiable(self.col.type):
return df[self.col.name].std()
logger.debug(
Fixes #9301 - Refactor TestSuite and Remove Pandas from Base Requirements (#10244) * feat(testSuite): extracted out column test for SQA type * refactor(testSuite): extracted SQA column and table tests into their own classes * refactor(testSuite): Added pkutil namespace package style for test suite classes * refactor(testSuite): added dynamic importer function for test cases * refactor(testSuite): black formatting * refactor(testSuite): fixed linting issues * refactor(testSuite): refactor metrics for dataframe * refactor(testSuite): Added Mixins and base methods * refactor(testSuite): extrcated out get bound for floats * refactor(testSuite): Added pandas column test cases * refactor(testSuite): Deleted old column tests * refactor(testSuite): Added table tests for datalake * refactor(testSuite): Removed old tests definition * refactor(testSuite): changed registry to dynamic class inport * refactor(testSuite): renamed dl_fn to df_fn * refactor(testSuite): updated registry unit test * refactor(testSuite): updated import path to sqa like column * refactor(testSuite): cleaned up imports in old files * refactor(testSuite): harmonzied SQALikeColumn object to replicate SQA Column object * refactor(testSuite): linting * refactor(testSuite): linting * refactor(testSuite): raise expection on DQ exception * refactor(testSuite): linting * refactor(testSuite): removed pandas from base requirements * refactor(testSuite): Added __futur__ for py3.7 type hint * refactor(testSuite): added `df` to good-names * refactor(testSuite): renamed Handler to Validator * refactor(testSuite): Added test inheritance for column tests * refactor(testSuite): cleaned up column type check * refactor(testSuite): cleaned up typo * refactor(testSuite): extracted main table test logic into parent class * refactor(testSuite): linting * refactor(testSuite): linting fixes * refactor(testSuite): address doc string and linting issues
2023-02-22 09:42:34 +01:00
f"{self.col.name} has type {self.col.type}, which is not listed as quantifiable."
+ " We won't compute STDDEV for it."
)
return 0