MINOR: fix table profiler on empty tables in trino (#17471)

* fix(profiler): trino

coalesce row count to 0 if result is null. this value gets returned for empty tables

* fixed test_metadata.py

ingestion/src/_openmetadata_testutils/pydantic/test_utils.py

@@ -43,7 +43,6 @@ def assert_equal_pydantic_objects(
     """
     errors = []
     queue = deque([(expected, actual, "")])
-
     while queue:
         expected, actual, current_key_prefix = queue.popleft()
         if not isinstance(expected, actual.__class__):
@@ -52,11 +51,13 @@ def assert_equal_pydantic_objects(
                 f"expected: [{type(expected).__name__}], actual: [{type(actual).__name__}]"
             )
             continue
-        if issubclass(expected.__class__, BaseModel):
+        if issubclass(expected.__class__, BaseModel) and isinstance(
-            for key, expected_value in expected.dict().items():
+            expected.model_dump(), dict
+        ):
+            for key, expected_value in expected.model_dump().items():
                 if expected_value is None and ignore_none:
                     continue
-                actual_value = actual.dict().get(key)
+                actual_value = actual.model_dump().get(key)
                 new_key_prefix = (
                     f"{current_key_prefix}.{key}" if current_key_prefix else key
                 )

ingestion/src/metadata/profiler/orm/functions/sum.py

@@ -45,7 +45,7 @@ def _(element, compiler, **kw):
 def _(element, compiler, **kw):
     """Cast to DECIMAL to address cannot cast nan to bigint"""
     proc = compiler.process(element.clauses, **kw)
-    return f"SUM(TRY_CAST({proc} AS DECIMAL))"
+    return f"COALESCE(SUM(CAST({proc} AS DECIMAL)),0)"
 
 
 @compiles(SumFn, Dialects.BigQuery)

ingestion/tests/integration/conftest.py

@@ -59,7 +59,7 @@ def workflow_config(metadata):
     }
 
 
-@pytest.fixture()
+@pytest.fixture(scope="module")
 def profiler_config(db_service, workflow_config, sink_config):
     return {
         "source": {
@@ -82,7 +82,7 @@ def profiler_config(db_service, workflow_config, sink_config):
     }
 
 
-@pytest.fixture()
+@pytest.fixture(scope="module")
 def run_workflow():
     def _run(workflow_type: Type[IngestionWorkflow], config, raise_from_status=True):
         workflow: IngestionWorkflow = workflow_type.create(config)
@@ -152,8 +152,14 @@ def create_service_request():
     raise NotImplementedError("Implement in the test module")
 
 
-@pytest.fixture()
+@pytest.fixture(scope="module")
-def patch_passwords_for_db_services(db_service, unmask_password, monkeypatch):
+def monkeymodule():
+    with pytest.MonkeyPatch.context() as mp:
+        yield mp
+
+
+@pytest.fixture(scope="module")
+def patch_passwords_for_db_services(db_service, unmask_password, monkeymodule):
     """Patch the password for all db services returned by the metadata service.
 
     Usage:
@@ -178,12 +184,12 @@ def patch_passwords_for_db_services(db_service, unmask_password, monkeypatch):
 
         return inner
 
-    monkeypatch.setattr(
+    monkeymodule.setattr(
         "metadata.ingestion.ometa.ometa_api.OpenMetadata.get_by_name",
         override_password(OpenMetadata.get_by_name),
     )
 
-    monkeypatch.setattr(
+    monkeymodule.setattr(
         "metadata.ingestion.ometa.ometa_api.OpenMetadata.get_by_id",
         override_password(OpenMetadata.get_by_id),
     )

ingestion/tests/integration/postgres/test_usage.py

@@ -42,7 +42,14 @@ def usage_config(sink_config, workflow_config, db_service):
     }
 
 
-def test_usage(run_workflow, ingestion_config, usage_config, metadata, db_service):
+def test_usage(
+    patch_passwords_for_db_services,
+    run_workflow,
+    ingestion_config,
+    usage_config,
+    metadata,
+    db_service,
+):
     search_cache.clear()
     run_workflow(MetadataWorkflow, ingestion_config)
     run_workflow(UsageWorkflow, usage_config)
@@ -54,7 +61,12 @@ def test_usage(run_workflow, ingestion_config, usage_config, metadata, db_servic
     strict=True,
 )
 def test_usage_delete_usage(
-    run_workflow, ingestion_config, usage_config, metadata, db_service
+    patch_passwords_for_db_services,
+    run_workflow,
+    ingestion_config,
+    usage_config,
+    metadata,
+    db_service,
 ):
     search_cache.clear()
     run_workflow(MetadataWorkflow, ingestion_config)

ingestion/tests/integration/trino/conftest.py

@@ -1,10 +1,13 @@
 import os.path
 import random
+from time import sleep
 
 import docker
+import pandas as pd
 import pytest
 import testcontainers.core.network
-from sqlalchemy import create_engine
+from sqlalchemy import create_engine, insert
+from sqlalchemy.engine import make_url
 from tenacity import retry, stop_after_delay, wait_fixed
 from testcontainers.core.container import DockerContainer
 from testcontainers.core.generic import DbContainer
@@ -121,15 +124,19 @@ def docker_network():
 
 @pytest.fixture(scope="session")
 def trino_container(hive_metastore_container, minio_container, docker_network):
-    with TrinoContainer(image="trinodb/trino:418").with_network(
+    container = (
-        docker_network
+        TrinoContainer(image="trinodb/trino:418")
-    ).with_env(
+        .with_network(docker_network)
-        "HIVE_METASTORE_URI",
+        .with_env(
-        f"thrift://metastore:{hive_metastore_container.port}",
+            "HIVE_METASTORE_URI",
-    ).with_env(
+            f"thrift://metastore:{hive_metastore_container.port}",
-        "MINIO_ENDPOINT",
+        )
-        f"http://minio:{minio_container.port}",
+        .with_env(
-    ) as trino:
+            "MINIO_ENDPOINT",
+            f"http://minio:{minio_container.port}",
+        )
+    )
+    with try_bind(container, container.port, container.port + 1) as trino:
         yield trino
 
 
@@ -177,15 +184,51 @@ def minio_container(docker_network):
 
 @pytest.fixture(scope="session")
 def create_test_data(trino_container):
-    engine = create_engine(trino_container.get_connection_url())
+    engine = create_engine(
+        make_url(trino_container.get_connection_url()).set(database="minio")
+    )
     engine.execute(
         "create schema minio.my_schema WITH (location = 's3a://hive-warehouse/')"
     )
-    engine.execute("create table minio.my_schema.test_table (id int)")
+    data_dir = os.path.dirname(__file__) + "/data"
-    engine.execute("insert into minio.my_schema.test_table values (1), (2), (3)")
+    for file in os.listdir(data_dir):
+        df = pd.read_parquet(f"{data_dir}/{file}")
+        for col in df.columns:
+            if pd.api.types.is_datetime64tz_dtype(df[col]):
+                df[col] = df[col].dt.tz_convert(None)
+        df.to_sql(
+            file.replace(".parquet", ""),
+            engine,
+            schema="my_schema",
+            if_exists="fail",
+            index=False,
+            method=custom_insert,
+        )
+        sleep(1)
     return
 
 
+def custom_insert(self, conn, keys: list[str], data_iter):
+    """
+    Hack pandas.io.sql.SQLTable._execute_insert_multi to retry untill rows are inserted.
+    This is required becauase using trino with pd.to_sql in our setup us unreliable.
+    """
+    rowcount = 0
+    max_tries = 10
+    try_num = 0
+    data = [dict(zip(keys, row)) for row in data_iter]
+    while rowcount != len(data):
+        if try_num >= max_tries:
+            raise RuntimeError(f"Failed to insert data after {max_tries} tries")
+        try_num += 1
+        stmt = insert(self.table).values(data)
+        conn.execute(stmt)
+        rowcount = conn.execute(
+            "SELECT COUNT(*) FROM " + f'"{self.schema}"."{self.name}"'
+        ).scalar()
+    return rowcount
+
+
 @pytest.fixture(scope="module")
 def create_service_request(trino_container, tmp_path_factory):
     return CreateDatabaseServiceRequest(
@@ -203,7 +246,7 @@ def create_service_request(trino_container, tmp_path_factory):
     )
 
 
-@pytest.fixture
+@pytest.fixture(scope="module")
 def ingestion_config(db_service, sink_config, workflow_config, base_ingestion_config):
     base_ingestion_config["source"]["sourceConfig"]["config"]["schemaFilterPattern"] = {
         "excludes": [

ingestion/tests/integration/trino/test_metadata.py

@@ -1,19 +1,27 @@
+import pytest
+
 from metadata.generated.schema.entity.data.table import Table
 from metadata.ingestion.ometa.ometa_api import OpenMetadata
 from metadata.workflow.metadata import MetadataWorkflow
 
 
-def test_metadata(
+@pytest.fixture(scope="module")
-    db_service, metadata: OpenMetadata, run_workflow, ingestion_config, create_test_data
+def run_workflow(run_workflow, ingestion_config, create_test_data):
-):
     run_workflow(MetadataWorkflow, ingestion_config)
-    tables = metadata.list_entities(
+
-        Table,
+
-        params={
+@pytest.mark.parametrize(
-            "databaseSchema": f"{db_service.fullyQualifiedName.root}.minio.my_schema"
+    "table_name",
-        },
+    [
-    )
+        "{database_service}.minio.my_schema.table",
-    assert (
+        "{database_service}.minio.my_schema.titanic",
-        next((t for t in tables.entities if t.name.root == "test_table"), None)
+        "{database_service}.minio.my_schema.iris",
-        is not None
+        "{database_service}.minio.my_schema.userdata",
+        "{database_service}.minio.my_schema.empty",
+    ],
+    ids=lambda x: x.split(".")[-1],
+)
+def test_metadata(run_workflow, db_service, metadata: OpenMetadata, table_name):
+    metadata.get_by_name(
+        Table, table_name.format(database_service=db_service.fullyQualifiedName.root)
     )

ingestion/tests/integration/trino/test_profiler.py

@@ -1,9 +1,22 @@
+from dataclasses import dataclass
+from typing import List
+
+import pytest
+
+from _openmetadata_testutils.pydantic.test_utils import assert_equal_pydantic_objects
+from metadata.generated.schema.entity.data.table import (
+    ColumnProfile,
+    Table,
+    TableProfile,
+)
+from metadata.generated.schema.type.basic import Timestamp
 from metadata.ingestion.lineage.sql_lineage import search_cache
 from metadata.workflow.metadata import MetadataWorkflow
 from metadata.workflow.profiler import ProfilerWorkflow
 
 
-def test_profiler(
+@pytest.fixture(scope="module")
+def run_profiler(
     patch_passwords_for_db_services,
     run_workflow,
     ingestion_config,
@@ -13,3 +26,103 @@ def test_profiler(
     search_cache.clear()
     run_workflow(MetadataWorkflow, ingestion_config)
     run_workflow(ProfilerWorkflow, profiler_config)
+
+
+@dataclass
+class ProfilerTestParameters:
+    table_fqn: str
+    expected_table_profile: TableProfile
+    expected_column_profiles: List[ColumnProfile] = None
+
+
+@pytest.mark.parametrize(
+    "parameters",
+    [
+        ProfilerTestParameters(
+            "{database_service}.minio.my_schema.table",
+            TableProfile(timestamp=Timestamp(0), rowCount=3),
+            [
+                ColumnProfile(
+                    name="three",
+                    timestamp=Timestamp(0),
+                    valuesCount=2,
+                    nullCount=1,
+                )
+            ],
+        ),
+        ProfilerTestParameters(
+            "{database_service}.minio.my_schema.titanic",
+            TableProfile(timestamp=Timestamp(0), rowCount=891),
+            [
+                ColumnProfile(
+                    name="name",
+                    timestamp=Timestamp(0),
+                    valuesCount=891,
+                    nullCount=0,
+                )
+            ],
+        ),
+        ProfilerTestParameters(
+            "{database_service}.minio.my_schema.iris",
+            TableProfile(timestamp=Timestamp(0), rowCount=150),
+            [
+                ColumnProfile(
+                    name="petal.length",
+                    timestamp=Timestamp(0),
+                    valuesCount=150,
+                    nullCount=0,
+                )
+            ],
+        ),
+        ProfilerTestParameters(
+            "{database_service}.minio.my_schema.userdata",
+            TableProfile(timestamp=Timestamp(0), rowCount=1000),
+            [
+                ColumnProfile(
+                    name="gender",
+                    timestamp=Timestamp(0),
+                    valuesCount=1000,
+                    nullCount=0,
+                )
+            ],
+        ),
+        ProfilerTestParameters(
+            "{database_service}.minio.my_schema.empty",
+            TableProfile(timestamp=Timestamp(0), rowCount=0),
+            [
+                ColumnProfile(
+                    name="a",
+                    timestamp=Timestamp(0),
+                    valuesCount=0,
+                    nullCount=0,
+                )
+            ],
+        ),
+    ],
+    ids=lambda x: x.table_fqn.split(".")[-1],
+)
+def test_profiler(
+    run_profiler, metadata, db_service, parameters: ProfilerTestParameters
+):
+    table: Table = metadata.get_latest_table_profile(
+        parameters.table_fqn.format(database_service=db_service.fullyQualifiedName.root)
+    )
+    assert_equal_pydantic_objects(
+        parameters.expected_table_profile,
+        # we dont want to validate the timestamp because it will be different for each run
+        table.profile.model_copy(
+            update={"timestamp": parameters.expected_table_profile.timestamp}
+        ),
+    )
+    for profile in parameters.expected_column_profiles:
+        column = next(
+            (col for col in table.columns if col.profile.name == profile.name), None
+        )
+        if column is None:
+            raise AssertionError(
+                f"Column [{profile.name}] not found in table [{table.fullyQualifiedName.root}]"
+            )
+        assert_equal_pydantic_objects(
+            profile,
+            column.profile.model_copy(update={"timestamp": profile.timestamp}),
+        )

ingestion/tests/integration/trino/trino/etc/log.properties

@@ -1 +1,2 @@
-io.trino=DEBUG
+# Set to DEBUG for verbose logging
+io.trino=INFO