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374 Commits

Author SHA1 Message Date
Pere Miquel Brull
2444b884bf
Fix #3150 - Missing count & value length tests (#3193) 
Fix #3150 - Missing count & value length tests (#3193)
 2022-03-07 07:19:13 +01:00
Pere Miquel Brull
4a752e3ab2
Fix #3151 - Ingestion profiler should use ORM Profiler (#3192) 2022-03-06 15:43:43 -08:00
Francisco J. Jurado Moreno
a6e98b3fdb
Fix2113 - Database Service API Integration tests (#3185) 2022-03-06 14:59:32 +01:00
Pere Miquel Brull
4116233697
Fix #3105 - ColumnValuesToMatchRegex & other fixes (#3149) 
Fix #3105 - ColumnValuesToMatchRegex & other fixes (#3149)
 2022-03-04 18:11:49 +01:00
Pere Miquel Brull
bd7b91b448
Fix #3112 - col profile safety & sample data (#3142) 
Fix #3112 - col profile safety & sample data (#3142)
 2022-03-04 13:14:11 +01:00
Snyk bot
834bb8e483
fix: ingestion/tests/integration/source/mlflow/Dockerfile to reduce vulnerabilities (#3134) 
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-DEBIAN11-AOM-1290331
- https://snyk.io/vuln/SNYK-DEBIAN11-AOM-1298721
- https://snyk.io/vuln/SNYK-DEBIAN11-AOM-1300249
- https://snyk.io/vuln/SNYK-DEBIAN11-UNZIP-2396444
- https://snyk.io/vuln/SNYK-DEBIAN11-UNZIP-2396445
 2022-03-04 08:34:24 +01:00
Snyk bot
8132b91c30
fix: ingestion/tests/integration/lineage/airflow/requirements.txt to reduce vulnerabilities (#3130) 
The following vulnerabilities are fixed by pinning transitive dependencies:
- https://snyk.io/vuln/SNYK-PYTHON-APACHEAIRFLOW-2413442
- https://snyk.io/vuln/SNYK-PYTHON-APACHEAIRFLOW-2414089
- https://snyk.io/vuln/SNYK-PYTHON-WTFORMS-40581
 2022-03-04 07:49:58 +01:00
Pere Miquel Brull
e96ac838ff
Fix #3084 - Implement missing tests (#3117) 
Fix #3084 - Implement missing tests
 2022-03-04 06:59:47 +01:00
Pere Miquel Brull
71207de362
Fix #2875 - Profiler API Sink (#3011) 
Fix #2875 - Profiler API Sink
 2022-03-02 16:46:28 +01:00
Alberto Miorin
fe5618c8f1
Fix #3037: metadata --version doesn't work (#3038) 2022-03-01 12:19:36 +01:00
Pere Miquel Brull
990608522a
Fix #2981 - Update Profile to match TableProfile (#2982) 2022-02-25 09:26:30 -08:00
Pere Miquel Brull
4d928bab80
Fix #2965 - Additional Properties set to False (#2976) 2022-02-24 08:38:56 -08:00
Pere Miquel Brull
a4b383fa83
Fix #2897 - Profiler CLI (#2967) 
Fix #2897 - Profiler CLI
 2022-02-24 08:03:50 +01:00
Pere Miquel Brull
1fb0e7c489
Fix #2878 & #2877 - Implement Metrics and Validate Composed Metrics (#2926) 
Fix #2878 & #2877 - Implement Metrics and Validate Composed Metrics
 2022-02-24 07:08:39 +01:00
Pere Miquel Brull
1224d20a36
Fix #2894 - Profiler Processor & Metrics (#2900) 
Fix #2894 - Profiler Processor & Metrics (#2900)
 2022-02-22 08:09:02 +01:00
Pere Miquel Brull
e55579aaa8
Fix #2845 - Init Profiler Workflow (#2862) 
* Fix list typing

* Add sqlite service

* Add sqlite service

* Add sqlite service

* Refactor validation into class

* Refactor validation into class

* Prepare table simple profiler

* Add note

* test ORM conversion

* Prepare workflow config utilities

* Prepare workflow skeleton

* Use new core Validation

* Refactor workflow config parsing

* Add comment

* Simplify workflow validations

* Fix table metric check

* Add init for convenience, otherwise interpreter cries when trying to __call__ the get result

* Fix table metric check

* Format

* Format

* Fix table list and metrics init

* Prepare profiler workflow integration tests

* Bump version

* Fix pycharm imports

* format
 2022-02-20 17:55:12 +01:00
Pere Miquel Brull
f304d290b4
Fix #2751 - Init ORM Profiler (#2831) 
* ORM Profiler skeleton

* Fix table name within service

* Add license

* Prepare custom types

* Fix converter

* Compute stddev only on numeric

* Prepare smart registries

* Update tests

* Update results retrieval

* Fix composed metrics result

* Format

* Add missing type

* Add _label decorator

* clean readme

* clean readme

* Filter types when profiler runs not allowed metric types

* Fix null ratio

* Add proper type

* RuleMetric skeleton

* Prepare table metrics

* Update simple profiler

* Format

* Define test expression grammar and node visiting

* Unify metric registry

* Prepare validation core

* Add grammar lib

* Add safe get

* Format

* Allow decimals in grammar

* Test validation conversion

* Fix validation conversion and test

* Rename to row_number

* Update READMEs

* Format

* Row number naming

* Fix rename
 2022-02-18 07:48:38 +01:00
Sriharsha Chintalapani
50799227e4
Fix #2817: Remove indexing of Glossary as another Elasticsearch index (#2818) 2022-02-16 20:10:26 -08:00
Suresh Srinivas
28ba1a3c04
Fixes #2760 - Add entities for Glossary and initial API (#2761) 
* Fixes #2760 - Add entities for Glossary and initial API

* Fixing merge issues
 2022-02-15 20:54:46 -08:00
Pere Miquel Brull
76f4ccd590
Fix #2735 - Simplify Airflow properties extraction (#2749) 
* Simplify lineage properties extraction

* Add network name

* Format
 2022-02-14 16:53:42 +01:00
Pere Miquel Brull
1b2ea54d4f
Fix #2316 - Append Tasks & Add Status in Airflow (#2738) 
* Add license

* Add date to timestamp helper

* Prepare pipeline status operation

* Update and clean tasks from client

* Update tasks from client

* Check if pipeline is empty

* Keep all current pipeline info

* Append and clean tasks

* format

* Add status information

* Test pipelineStatus update

* Update task on clear

* Log status on callback

* Update lineage and status docs

* Update lineage docs

* Format

* Logic to handle DAG status

* Lint and format

* Update lineage tests
 2022-02-13 17:51:25 +01:00
Teddy
b5ddada930
Fix #1526: Added OMetaTag mixin 2022-02-06 12:42:13 -08:00
Vivek Ratnavel Subramanian
e6343a79d7
Fix #2555: PUT APIs should only allow admin and owners to update a resource in secure env (#2608) 2022-02-04 12:39:08 -08:00
Mayur Singal
5a6e7d743e
ISSUE-545: Added tests for QueryProcessor (#2510) 
Co-authored-by: Mayur SIngal <mayursingal@Mayurs-MacBook-Pro.local>
 2022-02-04 08:20:20 -08:00
Robert Pack
67a1c23482
Fix #2348: Harmonize request titles in json schemas 2022-01-31 16:29:56 -08:00
Pere Miquel Brull
05c8d1ebb6
Fix #2153 - Lineage date parsing (#2387) 
* Check for start_date

* Fix date keys and remove repr

* Add date management tests
 2022-01-24 12:29:16 -08:00
Sriharsha Chintalapani
f390bac375
Fix 2270: Column Type Parser (#2271) 
* Fix 2270: Column Type Parser

* Fix 2270: Column Type Parser

* Added checks to allow arrayDataType and dataTypeDisplay

* Modified - arrayDataType and dataTypeDisplay

* Update sql_source.py

* Update sql_source.py

* file formatted

* Modified according to column_type_parser.py

* modified / refactored / deleted the files

* Added Tests, modified sql_source

* file formatted

* Added missing datatypes

* Added Tests

* Added Tests

* Added Tests - refactored expected output into a json file

* file formatted

* Sample Data Updated

Co-authored-by: Ayush Shah <ayush@getcollate.io>
 2022-01-22 23:32:58 +05:30
Sriharsha Chintalapani
10e71a7e09
Fix #2340: Ingestion pipeline deployment refactor (#2341) 
* Fix #2340: Ingestion pipeline deployment refactor
 2022-01-21 22:06:14 -08:00
codingwithabhi
ddf4ae261b
Bigquery credential configuration updated (#2041) 
* bigquery-credentials-in-bigquery-json

* ui-changes-reverted

* credentials-moved-to-options

* Update bigquery.json

* Update bigquery.py

* delete-temp-code-added

* delete-temp-code-added

* removed-init-from-config

* Update datatypes_test.py

* Update column_helpers.py

* code-formatted

Co-authored-by: Abhishek <abhishek@Abhisheks-MacBook-Air.local>
Co-authored-by: = <=>
Co-authored-by: Ayush Shah <ayush@getcollate.io>
 2022-01-21 17:23:02 +05:30
Sriharsha Chintalapani
0d3ded0742
Data Profiler Integration (#2235) 
* Fix 2234: Data profiler integration
 2022-01-18 20:25:43 -08:00
Pere Miquel Brull
a9c840778a
[issue-2116] - Add target property to MlModel (#2134) 
* Add target property to MlModel

* Use pull_request_target for forks

* Simplify str

* Update ingestion-core setup

* Bump ingestion-core version

* Update install
 2022-01-18 16:27:35 +01:00
Pere Miquel Brull
2728041d0f
[issue-2213] - Airflow lineage refactor (#2218) 
* Fix ometa logging

* Refactor airflow lineage

* Refactor airflow lineage

* Add airflow lineage integration tests

* Fix circular dependency
 2022-01-14 13:00:33 -08:00
Pere Miquel Brull
d3b6c7cf27
[issue-1973] - Python API from Sklearn to MlModel (#2119) 
* Move staticmethods to utils

* Use functions from utils

* Convert sklearn to MlModel

* merge main
 2022-01-10 09:36:08 +01:00
Pere Miquel Brull
178315d68a
[issue-2112] - Add helper to get EntityReference in OMeta API (#2114) 
* Use entity list from mixin

* Add entity reference helper

* Add tests for retrieving the entity reference

* Add missing space

* Fix shadowing

* Use get entity ref

* Use get entity ref
 2022-01-10 09:07:39 +01:00
Teddy
dbcc5e9dd2
ISSUE-1048: Add Version Mixin (#2018) 
* Added entity version mixins logics to ometa API

* remove logging in line 385 used for testing

* Fixed black error + ran isort

* remove extra underscore in

* Added integration tests for OpenMetadata versions methods

* Fixed linting errors in versionMixin.py
 2022-01-07 10:37:56 +01:00
Pere Miquel Brull
48ebcffbd0
[issue-1976] - Ingestion SonarCloud (#2085) 
* Update path

* Prepare sonar properties

* Prepare coverage recipes

* Add coverage

* Simplify pytest

* Organise integration tests

* Update path

* Use setup instead of reqs

* Update recipes

* Fix PR event to target

* Update event_name

* Prepare sonar

* Run tests & sonar

* Use sonarcloud host

* Fix compose

* Use ingestion token
 2022-01-07 10:28:38 +01:00
Alberto Miorin
c8de136cca
First part of #2091: Python code in branch main is always formatted correctly (#2093) 2022-01-07 06:17:48 +01:00
Pere Miquel Brull
eb01c55676
Update naming (#2080) 2022-01-06 14:42:50 +01:00
Ayush Shah
5d6f385a75
Added Filter Params for Table and Schema (#1954) 
* Added Filter Params for table and Schema

* Bigquery Doc changes

* Doc Changes for databases

* Filter Pattern Changes

* Table Filter Pattern Example Changes

* Filter Pattern Example Changes
 2021-12-29 09:13:09 -08:00
Pere Miquel Brull
1f01081698
Clean DBT Model (#1888) 2021-12-22 17:17:05 +01:00
Pere Miquel Brull
d303be847e
Prepare MlModel lineage (#1879) 2021-12-21 17:44:29 -08:00
Pere Miquel Brull
ab620e95af
[issue-1750] - Expandvars transforming values (#1830) 
* Prepare tests for basic config cases

* Add test cases

* Use os expandvars

* Add missing commas

* Add missing commas

* Remove dataclasses backport
 2021-12-18 15:35:12 -08:00
Alberto Miorin
93276079ec
Fix #1729: Connector Trino works with username. (#1732) 
Implementation details
I have decided to rename schema_name to database and make it mandatory. Without database there is an error while scanning all available tables. The connector doesn't support multiple databases at the moment. It has to be tested with passwords. Trino requires SSL if you use passwords. It has to be tested with impersonation. I have removed quote_plus because I don't think it's needed.

- [x] Support username
- [ ] There is an integration test
- [ ] Support impersonation
- [ ] Support passwords
- [ ] Support tokens
- [ ] Support multiple databases
 2021-12-13 22:05:28 +01:00
Pere Miquel Brull
a7c8056bf5
[issue-1079] - MlFlow Connector (#1677) 
* Prepare infra

* Store experiment information in MySQL & MinIO

* Use CreateMlModelEntityRequest instead of MlModel for PUT operations

* Update MlFlow infra

* Prepare MlFlow source

* Prepare Mlflow workflow

* Simplify test and prepare README

* Revert compose

* Fix compose

* Prepare warnings and fix features

* Use non-default port for integration test

* Use mlflow-skinny for the client application
 2021-12-11 18:40:19 -08:00
Ayush Shah
67433f559c
Trino JDBC updated (#1614) 2021-12-08 13:14:38 +05:30
Ayush Shah
b592f86941
Added Unit tests for datatypes (#1405) 
* Added Unittests for datatypes

* OpenMetadata Datatypes added in unittest

* Added few more datatype support

* SqlTypes updated
 2021-12-08 00:31:51 +05:30
Alberto Miorin
8621ee3fa0
Fix #1533, #1522: (#1575) 
- Glue works with columns containing dots.
- Glue works with temporary credentials.
- Fix bug in TableRepository, the EntityType was database instead of table.
- only region_name is mandatory in Glue config.
- first integration test for Glue. The CI integration with AWS is still missing.
 2021-12-06 16:03:05 -08:00
Pere Miquel Brull
185ef5e98f
Get id as str or uuid (#1562) 2021-12-06 08:40:53 +01:00
Alberto Miorin
f9436c65f0
Fix #1306: Evolve Location entity integration (#1442) 2021-12-03 02:13:13 +01:00
parthp2107
a9e70e6a89
License header update (#1498) 
* updated liscense header

* updated license header

* updated license header

* updated license header

* addressing stylecheck findings
 2021-12-01 12:46:28 +05:30