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a3d6c1dd20
* tests(datalake): use minio 1. use minio instead of moto for mimicking s3 behavior. 2. removed moto dependency as it is not compatible with aiobotocore (https://github.com/getmoto/moto/issues/7070#issuecomment-1828484982) * - moved test_datalake_profiler_e2e.py to datalake/test_profiler - use minio instead of moto * fixed tests * fixed tests * removed default name for minio container
312 lines
11 KiB
Python
312 lines
11 KiB
Python
# Copyright 2021 Collate
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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"""
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Test Datalake Profiler workflow
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To run this we need OpenMetadata server up and running.
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No sample data is required beforehand
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"""
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import pytest
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from ingestion.tests.integration.datalake.conftest import BUCKET_NAME
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from metadata.generated.schema.entity.data.table import ColumnProfile, Table
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from metadata.utils.time_utils import (
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get_beginning_of_day_timestamp_mill,
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get_end_of_day_timestamp_mill,
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)
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from metadata.workflow.profiler import ProfilerWorkflow
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from metadata.workflow.workflow_output_handler import WorkflowResultStatus
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@pytest.fixture(scope="class", autouse=True)
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def before_each(run_ingestion):
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pass
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class TestDatalakeProfilerTestE2E:
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"""datalake profiler E2E test"""
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def test_datalake_profiler_workflow(self, ingestion_config, metadata):
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ingestion_config["source"]["sourceConfig"]["config"].update(
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{
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"type": "Profiler",
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}
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)
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ingestion_config["processor"] = {
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"type": "orm-profiler",
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"config": {},
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}
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profiler_workflow = ProfilerWorkflow.create(ingestion_config)
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profiler_workflow.execute()
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status = profiler_workflow.result_status()
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profiler_workflow.stop()
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assert status == WorkflowResultStatus.SUCCESS
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table_profile = metadata.get_profile_data(
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f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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get_beginning_of_day_timestamp_mill(),
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get_end_of_day_timestamp_mill(),
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)
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column_profile = metadata.get_profile_data(
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f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv".first_name',
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get_beginning_of_day_timestamp_mill(),
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get_end_of_day_timestamp_mill(),
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profile_type=ColumnProfile,
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)
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assert table_profile.entities
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assert column_profile.entities
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def test_values_partitioned_datalake_profiler_workflow(
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self, metadata, ingestion_config
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):
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"""Test partitioned datalake profiler workflow"""
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ingestion_config["source"]["sourceConfig"]["config"].update(
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{
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"type": "Profiler",
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}
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)
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ingestion_config["processor"] = {
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"type": "orm-profiler",
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"config": {
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"tableConfig": [
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{
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"fullyQualifiedName": f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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"partitionConfig": {
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"enablePartitioning": "true",
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"partitionColumnName": "first_name",
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"partitionIntervalType": "COLUMN-VALUE",
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"partitionValues": ["John"],
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},
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}
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]
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},
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}
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profiler_workflow = ProfilerWorkflow.create(ingestion_config)
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profiler_workflow.execute()
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status = profiler_workflow.result_status()
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profiler_workflow.stop()
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assert status == WorkflowResultStatus.SUCCESS
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table = metadata.get_by_name(
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entity=Table,
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fqn=f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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fields=["tableProfilerConfig"],
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nullable=False,
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)
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profile = metadata.get_latest_table_profile(table.fullyQualifiedName).profile
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assert profile.rowCount == 1.0
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def test_datetime_partitioned_datalake_profiler_workflow(
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self, ingestion_config, metadata
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):
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"""Test partitioned datalake profiler workflow"""
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ingestion_config["source"]["sourceConfig"]["config"].update(
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{
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"type": "Profiler",
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}
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)
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ingestion_config["processor"] = {
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"type": "orm-profiler",
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"config": {
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"tableConfig": [
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{
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"fullyQualifiedName": f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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"partitionConfig": {
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"enablePartitioning": "true",
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"partitionColumnName": "birthdate",
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"partitionIntervalType": "TIME-UNIT",
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"partitionIntervalUnit": "YEAR",
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"partitionInterval": 35,
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},
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}
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],
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},
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}
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profiler_workflow = ProfilerWorkflow.create(ingestion_config)
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profiler_workflow.execute()
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status = profiler_workflow.result_status()
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profiler_workflow.stop()
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assert status == WorkflowResultStatus.SUCCESS
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table = metadata.get_by_name(
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entity=Table,
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fqn=f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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fields=["tableProfilerConfig"],
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)
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profile = metadata.get_latest_table_profile(table.fullyQualifiedName).profile
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assert profile.rowCount == 2.0
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def test_integer_range_partitioned_datalake_profiler_workflow(
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self, ingestion_config, metadata
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):
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"""Test partitioned datalake profiler workflow"""
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ingestion_config["source"]["sourceConfig"]["config"].update(
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{
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"type": "Profiler",
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}
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)
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ingestion_config["processor"] = {
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"type": "orm-profiler",
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"config": {
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"tableConfig": [
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{
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"fullyQualifiedName": f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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"profileSample": 100,
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"partitionConfig": {
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"enablePartitioning": "true",
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"partitionColumnName": "age",
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"partitionIntervalType": "INTEGER-RANGE",
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"partitionIntegerRangeStart": 35,
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"partitionIntegerRangeEnd": 44,
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},
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}
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],
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},
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}
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profiler_workflow = ProfilerWorkflow.create(ingestion_config)
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profiler_workflow.execute()
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status = profiler_workflow.result_status()
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profiler_workflow.stop()
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assert status == WorkflowResultStatus.SUCCESS
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table = metadata.get_by_name(
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entity=Table,
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fqn=f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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fields=["tableProfilerConfig"],
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)
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profile = metadata.get_latest_table_profile(table.fullyQualifiedName).profile
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assert profile.rowCount == 2.0
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def test_datalake_profiler_workflow_with_custom_profiler_config(
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self, metadata, ingestion_config
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):
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"""Test custom profiler config return expected sample and metric computation"""
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profiler_metrics = [
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"MIN",
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"MAX",
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"MEAN",
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"MEDIAN",
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]
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id_metrics = ["MIN", "MAX"]
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non_metric_values = ["name", "timestamp"]
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ingestion_config["source"]["sourceConfig"]["config"].update(
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{
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"type": "Profiler",
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}
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)
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ingestion_config["processor"] = {
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"type": "orm-profiler",
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"config": {
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"profiler": {
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"name": "ingestion_profiler",
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"metrics": profiler_metrics,
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},
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"tableConfig": [
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{
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"fullyQualifiedName": f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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"columnConfig": {
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"includeColumns": [
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{"columnName": "id", "metrics": id_metrics},
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{"columnName": "age"},
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]
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},
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}
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],
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},
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}
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profiler_workflow = ProfilerWorkflow.create(ingestion_config)
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profiler_workflow.execute()
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status = profiler_workflow.result_status()
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profiler_workflow.stop()
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assert status == WorkflowResultStatus.SUCCESS
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table = metadata.get_by_name(
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entity=Table,
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fqn=f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv"',
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fields=["tableProfilerConfig"],
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)
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id_profile = metadata.get_profile_data(
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f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv".id',
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get_beginning_of_day_timestamp_mill(),
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get_end_of_day_timestamp_mill(),
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profile_type=ColumnProfile,
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).entities
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latest_id_profile = max(id_profile, key=lambda o: o.timestamp.root)
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id_metric_ln = 0
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for metric_name, metric in latest_id_profile:
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if metric_name.upper() in id_metrics:
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assert metric is not None
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id_metric_ln += 1
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else:
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assert metric is None if metric_name not in non_metric_values else True
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assert id_metric_ln == len(id_metrics)
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age_profile = metadata.get_profile_data(
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f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv".age',
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get_beginning_of_day_timestamp_mill(),
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get_end_of_day_timestamp_mill(),
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profile_type=ColumnProfile,
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).entities
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latest_age_profile = max(age_profile, key=lambda o: o.timestamp.root)
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age_metric_ln = 0
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for metric_name, metric in latest_age_profile:
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if metric_name.upper() in profiler_metrics:
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assert metric is not None
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age_metric_ln += 1
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else:
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assert metric is None if metric_name not in non_metric_values else True
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assert age_metric_ln == len(profiler_metrics)
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latest_exc_timestamp = latest_age_profile.timestamp.root
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first_name_profile = metadata.get_profile_data(
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f'{ingestion_config["source"]["serviceName"]}.default.{BUCKET_NAME}."profiler_test_.csv".first_name_profile',
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get_beginning_of_day_timestamp_mill(),
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get_end_of_day_timestamp_mill(),
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profile_type=ColumnProfile,
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).entities
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assert not [
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p for p in first_name_profile if p.timestamp.root == latest_exc_timestamp
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]
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sample_data = metadata.get_sample_data(table)
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assert sorted([c.root for c in sample_data.sampleData.columns]) == sorted(
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["id", "age"]
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)
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