mirror of
https://github.com/open-metadata/OpenMetadata.git
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* feat: add backend support for custom metrics * feat: fix python test * feat: support custom metrics computation * feat: updated tests for custom metrics * feat: added dl support for min max of datetime * feat: added is safe query check for query sampler * feat: added support for custom metric computation in dl * feat: added explicit addProper for pydantic model import fo Extra * feat: added custom metric to returned obj * feat: wrapped trino import in __init__ * feat: fix python linting * feat: fix typing in 3.8
481 lines
13 KiB
Python
481 lines
13 KiB
Python
# Copyright 2021 Collate
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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"""
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Helpers module for ingestion related methods
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"""
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from __future__ import annotations
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import itertools
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import re
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import shutil
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import sys
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from datetime import datetime, timedelta
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from functools import wraps
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from math import floor, log
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from pathlib import Path
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from time import perf_counter
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from typing import Any, Dict, Iterable, List, Optional, Tuple, Union
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import sqlparse
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from sqlparse.sql import Statement
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from metadata.generated.schema.entity.data.chart import ChartType
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from metadata.generated.schema.entity.data.table import Column, Table
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from metadata.generated.schema.entity.services.databaseService import DatabaseService
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from metadata.generated.schema.type.tagLabel import TagLabel
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from metadata.utils.constants import DEFAULT_DATABASE
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from metadata.utils.logger import utils_logger
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logger = utils_logger()
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class BackupRestoreArgs:
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def __init__( # pylint: disable=too-many-arguments
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self,
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host: str,
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user: str,
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password: str,
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database: str,
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port: str,
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options: List[str],
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arguments: List[str],
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schema: Optional[str] = None,
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):
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self.host = host
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self.user = user
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self.password = password
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self.database = database
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self.port = port
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self.options = options
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self.arguments = arguments
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self.schema = schema
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class DockerActions:
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def __init__(
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self,
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start: bool,
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stop: bool,
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pause: bool,
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resume: bool,
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clean: bool,
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reset_db: bool,
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):
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self.start = start
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self.stop = stop
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self.pause = pause
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self.resume = resume
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self.clean = clean
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self.reset_db = reset_db
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om_chart_type_dict = {
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"line": ChartType.Line,
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"big_number": ChartType.Line,
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"big_number_total": ChartType.Line,
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"dual_line": ChartType.Line,
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"line_multi": ChartType.Line,
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"table": ChartType.Table,
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"dist_bar": ChartType.Bar,
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"bar": ChartType.Bar,
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"box_plot": ChartType.BoxPlot,
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"boxplot": ChartType.BoxPlot,
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"histogram": ChartType.Histogram,
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"treemap": ChartType.Area,
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"area": ChartType.Area,
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"pie": ChartType.Pie,
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"text": ChartType.Text,
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"scatter": ChartType.Scatter,
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}
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def calculate_execution_time(func):
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"""
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Method to calculate workflow execution time
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"""
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@wraps(func)
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def calculate_debug_time(*args, **kwargs):
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start = perf_counter()
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result = func(*args, **kwargs)
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end = perf_counter()
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logger.debug(
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f"{func.__name__} executed in { pretty_print_time_duration(end - start)}"
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)
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return result
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return calculate_debug_time
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def calculate_execution_time_generator(func):
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"""
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Generator method to calculate workflow execution time
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"""
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def calculate_debug_time(*args, **kwargs):
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start = perf_counter()
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yield from func(*args, **kwargs)
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end = perf_counter()
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logger.debug(
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f"{func.__name__} executed in { pretty_print_time_duration(end - start)}"
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)
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return calculate_debug_time
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def pretty_print_time_duration(duration: Union[int, float]) -> str:
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"""
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Method to format and display the time
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"""
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days = divmod(duration, 86400)[0]
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hours = divmod(duration, 3600)[0]
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minutes = divmod(duration, 60)[0]
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seconds = round(divmod(duration, 60)[1], 2)
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if days:
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return f"{days}day(s) {hours}h {minutes}m {seconds}s"
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if hours:
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return f"{hours}h {minutes}m {seconds}s"
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if minutes:
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return f"{minutes}m {seconds}s"
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return f"{seconds}s"
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def get_start_and_end(duration: int = 0):
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"""
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Method to return start and end time based on duration
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"""
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today = datetime.utcnow()
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start = (today + timedelta(0 - duration)).replace(
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hour=0, minute=0, second=0, microsecond=0
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)
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# Add one day to make sure we are handling today's queries
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end = (today + timedelta(days=1)).replace(hour=0, minute=0, second=0, microsecond=0)
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return start, end
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def snake_to_camel(snake_str):
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"""
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Method to convert snake case text to camel case
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"""
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split_str = snake_str.split("_")
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split_str[0] = split_str[0].capitalize()
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if len(split_str) > 1:
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split_str[1:] = [u.title() for u in split_str[1:]]
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return "".join(split_str)
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def datetime_to_ts(date: Optional[datetime]) -> Optional[int]:
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"""
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Convert a given date to a timestamp as an Int in milliseconds
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"""
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return int(date.timestamp() * 1_000) if date else None
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def get_formatted_entity_name(name: str) -> Optional[str]:
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"""
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Method to get formatted entity name
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"""
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return (
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name.replace("[", "").replace("]", "").replace("<default>.", "")
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if name
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else None
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)
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def replace_special_with(raw: str, replacement: str) -> str:
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"""
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Replace special characters in a string by a hyphen
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:param raw: raw string to clean
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:param replacement: string used to replace
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:return: clean string
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"""
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return re.sub(r"[^a-zA-Z0-9]", replacement, raw)
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def get_standard_chart_type(raw_chart_type: str) -> ChartType.Other:
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"""
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Get standard chart type supported by OpenMetadata based on raw chart type input
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:param raw_chart_type: raw chart type to be standardize
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:return: standard chart type
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"""
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if raw_chart_type is not None:
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return om_chart_type_dict.get(raw_chart_type.lower(), ChartType.Other)
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return ChartType.Other
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def find_in_iter(element: Any, container: Iterable[Any]) -> Optional[Any]:
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"""
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If the element is in the container, return it.
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Otherwise, return None
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:param element: to find
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:param container: container with element
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:return: element or None
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"""
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return next((elem for elem in container if elem == element), None)
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def find_column_in_table(column_name: str, table: Table) -> Optional[Column]:
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"""
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If the column exists in the table, return it
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"""
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return next(
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(col for col in table.columns if col.name.__root__ == column_name), None
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)
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def find_column_in_table_with_index(
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column_name: str, table: Table
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) -> Optional[Tuple[int, Column]]:
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"""Return a column and its index in a Table Entity
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Args:
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column_name (str): column to find
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table (Table): Table Entity
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Return:
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A tuple of Index, Column if the column is found
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"""
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col_index, col = next(
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(
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(col_index, col)
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for col_index, col in enumerate(table.columns)
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if str(col.name.__root__).lower() == column_name.lower()
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),
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(None, None),
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)
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return col_index, col
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def list_to_dict(original: Optional[List[str]], sep: str = "=") -> Dict[str, str]:
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"""
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Given a list with strings that have a separator,
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convert that to a dictionary of key-value pairs
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"""
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if not original:
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return {}
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split_original = [
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(elem.split(sep)[0], elem.split(sep)[1]) for elem in original if sep in elem
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]
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return dict(split_original)
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def clean_up_starting_ending_double_quotes_in_string(string: str) -> str:
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"""Remove start and ending double quotes in a string
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Args:
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string (str): a string
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Raises:
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TypeError: An error occure checking the type of `string`
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Returns:
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str: a string with no double quotes
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"""
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if not isinstance(string, str):
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raise TypeError(f"{string}, must be of type str, instead got `{type(string)}`")
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return string.strip('"')
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def insensitive_replace(raw_str: str, to_replace: str, replace_by: str) -> str:
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"""Replace `to_replace` by `replace_by` in `raw_str` ignoring the raw_str case.
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Args:
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raw_str:str: Define the string that will be searched
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to_replace:str: Specify the string to be replaced
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replace_by:str: Replace the to_replace:str parameter in the raw_str:str string
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Returns:
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A string where the given to_replace is replaced by replace_by in raw_str, ignoring case
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"""
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return re.sub(to_replace, replace_by, raw_str, flags=re.IGNORECASE | re.DOTALL)
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def insensitive_match(raw_str: str, to_match: str) -> bool:
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"""Match `to_match` in `raw_str` ignoring the raw_str case.
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Args:
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raw_str:str: Define the string that will be searched
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to_match:str: Specify the string to be matched
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Returns:
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True if `to_match` matches in `raw_str`, ignoring case. Otherwise, false.
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"""
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return re.match(to_match, raw_str, flags=re.IGNORECASE | re.DOTALL) is not None
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def get_entity_tier_from_tags(tags: list[TagLabel]) -> Optional[str]:
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"""_summary_
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Args:
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tags (list[TagLabel]): list of tags
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Returns:
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Optional[str]
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"""
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if not tags:
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return None
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return next(
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(
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tag.tagFQN.__root__
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for tag in tags
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if tag.tagFQN.__root__.lower().startswith("tier")
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),
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None,
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)
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def format_large_string_numbers(number: Union[float, int]) -> str:
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"""Format large string number to a human readable format.
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(e.g. 1,000,000 -> 1M, 1,000,000,000 -> 1B, etc)
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Args:
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number: number
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"""
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if number == 0:
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return "0"
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units = ["", "K", "M", "B", "T"]
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constant_k = 1000.0
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magnitude = int(floor(log(abs(number), constant_k)))
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return f"{number / constant_k**magnitude:.2f}{units[magnitude]}"
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def clean_uri(uri: str) -> str:
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"""
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if uri is like http://localhost:9000/
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then remove the end / and
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make it http://localhost:9000
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"""
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return uri[:-1] if uri.endswith("/") else uri
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def deep_size_of_dict(obj: dict) -> int:
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"""Get deepsize of dict data structure
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Args:
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obj (dict): dict data structure
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Returns:
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int: size of dict data structure
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"""
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# pylint: disable=unnecessary-lambda-assignment
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dict_handler = lambda elmt: itertools.chain.from_iterable(elmt.items())
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handlers = {
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dict: dict_handler,
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list: iter,
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}
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seen = set()
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def sizeof(obj) -> int:
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if id(obj) in seen:
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return 0
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seen.add(id(obj))
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size = sys.getsizeof(obj, 0)
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for type_, handler in handlers.items():
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if isinstance(obj, type_):
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size += sum(map(sizeof, handler(obj)))
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break
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return size
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return sizeof(obj)
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def is_safe_sql_query(sql_query: str) -> bool:
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"""Validate SQL query
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Args:
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sql_query (str): SQL query
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Returns:
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bool
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"""
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forbiden_token = {
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"CREATE",
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"ALTER",
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"DROP",
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"TRUNCATE",
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"COMMENT",
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"RENAME",
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"INSERT",
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"UPDATE",
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"DELETE",
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"MERGE",
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"CALL",
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"EXPLAIN PLAN",
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"LOCK TABLE",
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"UNLOCK TABLE",
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"GRANT",
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"REVOKE",
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"COMMIT",
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"ROLLBACK",
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"SAVEPOINT",
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"SET TRANSACTION",
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}
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if sql_query is None:
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return True
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parsed_queries: Tuple[Statement] = sqlparse.parse(sql_query)
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for parsed_query in parsed_queries:
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validation = [
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token.normalized in forbiden_token for token in parsed_query.tokens
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]
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if any(validation):
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return False
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return True
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def get_database_name_for_lineage(
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db_service_entity: DatabaseService, default_db_name: Optional[str]
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) -> Optional[str]:
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# If the database service supports multiple db or
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# database service connection details are not available
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# then pick the database name available from api response
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if db_service_entity.connection is None or hasattr(
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db_service_entity.connection.config, "supportsDatabase"
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):
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return default_db_name
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# otherwise if it is an single db source then use "databaseName"
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# and if databaseName field is not available or is empty then use
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# "default" as database name
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return (
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db_service_entity.connection.config.__dict__.get("databaseName")
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or DEFAULT_DATABASE
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)
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def delete_dir_content(directory: str) -> None:
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location = Path(directory)
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if location.is_dir():
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logger.info("Location exists, cleaning it up")
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shutil.rmtree(directory)
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def init_staging_dir(directory: str) -> None:
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"""
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Prepare the the staging directory
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"""
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delete_dir_content(directory=directory)
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location = Path(directory)
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logger.info(f"Creating the directory to store staging data in {location}")
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location.mkdir(parents=True, exist_ok=True)
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