
* Refactor into automl subpackage Moved some of the packages into an automl subpackage to tidy before the task-based refactor. This is in response to discussions with the group and a comment on the first task-based PR. Only changes here are moving subpackages and modules into the new automl, fixing imports to work with this structure and fixing some dependencies in setup.py. * Fix doc building post automl subpackage refactor * Fix broken links in website post automl subpackage refactor * Fix broken links in website post automl subpackage refactor * Remove vw from test deps as this is breaking the build * Move default back to the top-level I'd moved this to automl as that's where it's used internally, but had missed that this is actually part of the public interface so makes sense to live where it was. * Re-add top level modules with deprecation warnings flaml.data, flaml.ml and flaml.model are re-added to the top level, being re-exported from flaml.automl for backwards compatability. Adding a deprecation warning so that we can have a planned removal later. * Fix model.py line-endings * Pin pytorch-lightning to less than 1.8.0 We're seeing strange lightning related bugs from pytorch-forecasting since the release of lightning 1.8.0. Going to try constraining this to see if we have a fix. * Fix the lightning version pin Was optimistic with setting it in the 1.7.x range, but that isn't compatible with python 3.6 * Remove lightning version pin * Revert dependency version changes * Minor change to retrigger the build * Fix line endings in ml.py and model.py Co-authored-by: Qingyun Wu <qingyun.wu@psu.edu> Co-authored-by: EgorKraevTransferwise <egor.kraev@transferwise.com>
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FLAML can be used together with AzureML. On top of that, using mlflow and ray is easy too.
Prerequisites
Install the [azureml] option.
pip install "flaml[azureml]"
Setup a AzureML workspace:
from azureml.core import Workspace
ws = Workspace.create(name='myworkspace', subscription_id='<azure-subscription-id>', resource_group='myresourcegroup')
Enable mlflow in AzureML workspace
import mlflow
from azureml.core import Workspace
ws = Workspace.from_config()
mlflow.set_tracking_uri(ws.get_mlflow_tracking_uri())
Start an AutoML run
from flaml.automl.data import load_openml_dataset
from flaml import AutoML
# Download [Airlines dataset](https://www.openml.org/d/1169) from OpenML. The task is to predict whether a given flight will be delayed, given the information of the scheduled departure.
X_train, X_test, y_train, y_test = load_openml_dataset(dataset_id=1169, data_dir="./")
automl = AutoML()
settings = {
"time_budget": 60, # total running time in seconds
"metric": "accuracy", # metric to optimize
"task": "classification", # task type
"log_file_name": "airlines_experiment.log", # flaml log file
}
experiment = mlflow.set_experiment("flaml") # the experiment name in AzureML workspace
with mlflow.start_run() as run: # create a mlflow run
automl.fit(X_train=X_train, y_train=y_train, **settings)
mlflow.sklearn.log_model(automl, "automl")
The metrics in the run will be automatically logged in an experiment named "flaml" in your AzureML workspace. They can be retrieved by mlflow.search_runs
:
mlflow.search_runs(experiment_ids=[experiment.experiment_id], filter_string="params.learner = 'xgboost'")
The logged model can be loaded and used to make predictions:
automl = mlflow.sklearn.load_model(f"{run.info.artifact_uri}/automl")
print(automl.predict(X_test))
Link to notebook | Open in colab
Use ray to distribute across a cluster
When you have a compute cluster in AzureML, you can distribute flaml.AutoML
or flaml.tune
with ray.
Build a ray environment in AzureML
Create a docker file such as .Docker/Dockerfile-cpu. Make sure RUN pip install flaml[blendsearch,ray]
is included in the docker file.
Then build a AzureML environment in the workspace ws
.
ray_environment_name = "aml-ray-cpu"
ray_environment_dockerfile_path = "./Docker/Dockerfile-cpu"
# Build CPU image for Ray
ray_cpu_env = Environment.from_dockerfile(name=ray_environment_name, dockerfile=ray_environment_dockerfile_path)
ray_cpu_env.register(workspace=ws)
ray_cpu_build_details = ray_cpu_env.build(workspace=ws)
import time
while ray_cpu_build_details.status not in ["Succeeded", "Failed"]:
print(f"Awaiting completion of ray CPU environment build. Current status is: {ray_cpu_build_details.status}")
time.sleep(10)
You only need to do this step once for one workspace.
Create a compute cluster with multiple nodes
from azureml.core.compute import AmlCompute, ComputeTarget
compute_target_name = "cpucluster"
node_count = 2
# This example uses CPU VM. For using GPU VM, set SKU to STANDARD_NC6
compute_target_size = "STANDARD_D2_V2"
if compute_target_name in ws.compute_targets:
compute_target = ws.compute_targets[compute_target_name]
if compute_target and type(compute_target) is AmlCompute:
if compute_target.provisioning_state == "Succeeded":
print("Found compute target; using it:", compute_target_name)
else:
raise Exception(
"Found compute target but it is in state", compute_target.provisioning_state)
else:
print("creating a new compute target...")
provisioning_config = AmlCompute.provisioning_configuration(
vm_size=compute_target_size,
min_nodes=0,
max_nodes=node_count)
# Create the cluster
compute_target = ComputeTarget.create(ws, compute_target_name, provisioning_config)
# Can poll for a minimum number of nodes and for a specific timeout.
# If no min node count is provided it will use the scale settings for the cluster
compute_target.wait_for_completion(show_output=True, min_node_count=None, timeout_in_minutes=20)
# For a more detailed view of current AmlCompute status, use get_status()
print(compute_target.get_status().serialize())
If the computer target "cpucluster" already exists, it will not be recreated.
Run distributed AutoML job
Assuming you have an automl script like ray/distribute_automl.py. It uses n_concurrent_trials=k
to inform AutoML.fit()
to perform k concurrent trials in parallel.
Submit an AzureML job as the following:
from azureml.core import Workspace, Experiment, ScriptRunConfig, Environment
from azureml.core.runconfig import RunConfiguration, DockerConfiguration
command = ["python distribute_automl.py"]
ray_environment_name = "aml-ray-cpu"
env = Environment.get(workspace=ws, name=ray_environment_name)
aml_run_config = RunConfiguration(communicator="OpenMpi")
aml_run_config.target = compute_target
aml_run_config.docker = DockerConfiguration(use_docker=True)
aml_run_config.environment = env
aml_run_config.node_count = 2
config = ScriptRunConfig(
source_directory="ray/",
command=command,
run_config=aml_run_config,
)
exp = Experiment(ws, "distribute-automl")
run = exp.submit(config)
print(run.get_portal_url()) # link to ml.azure.com
run.wait_for_completion(show_output=True)
Run distributed tune job
Prepare a script like ray/distribute_tune.py. Replace the command in the above eample with:
command = ["python distribute_tune.py"]
Everything else is the same.