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* fix(research, tasks): Make research command and task updates tag-aware * refactor(tasks): Prevent automatic task file generation across other locations This commit refactors several core task management functions to prevent them from automatically regenerating individual task files after modifying the main `tasks.json`. Previously, operations like `add-task`, `clear-subtasks`, `expand-task`, and `update-task-by-id` would immediately trigger `generateTaskFiles`. This could be slow and was often unnecessary. The calls to `generateTaskFiles` have been removed or commented out from the core task functions. Users should now run `task-master generate` explicitly to update their individual task files. Additionally, this commit includes fixes to the `move` command to make it fully tag-aware. * fix: move and clear subtasks mcp commands * chore: fix format * chore: fix unit tests --------- Co-authored-by: Ralph Khreish <35776126+Crunchyman-ralph@users.noreply.github.com>