5 Commits

Author SHA1 Message Date
Michele Dolfi
5458a88464
ci: add coverage and ruff (#1383)
* add coverage calculation and push

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* new codecov version and usage of token

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* enable ruff formatter instead of black and isort

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* apply ruff lint fixes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* apply ruff unsafe fixes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* add removed imports

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* runs 1 on linter issues

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* finalize linter fixes

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>

* Update pyproject.toml

Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>

---------

Signed-off-by: Michele Dolfi <dol@zurich.ibm.com>
Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
2025-04-14 18:01:26 +02:00
Christoph Auer
3960b199d6
feat: Add DoclingParseV4 backend, using high-level docling-parse API (#905)
* Add DoclingParseV3 backend implementation

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Use docling-core with docling-parse types

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fixes and test updates

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fix streams

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fix streams

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Reset tests

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* update test cases

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* update test units

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Add back DoclingParse v1 backend, pipeline options

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update locks

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* fix: update docling-core to 2.22.0

Update dependency library docling-core to latest release 2.22.0
Fix regression tests and ground truth files

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* Ground-truth files updated

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Update tests, use TextCell.from_ocr property

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Text fixes, new test data

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Rename docling backend to v4

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Test all backends, fixes

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Reset all tests to use docling-parse v1 for now

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* Fixes for DPv4 backend init, better test coverage

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

* test_input_doc use default backend

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>

---------

Signed-off-by: Christoph Auer <cau@zurich.ibm.com>
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
2025-03-18 10:38:19 +01:00
Suehtam
1d17e7397a
test: avoid testing exact JSON in CSV backend (#1038)
* feat: updated verify_export
Moved verify_export to verify_utils
Reuse verify_export in tests

Signed-off-by: Matheus Abdias <matheusfabdias@gmail.com>

* feat: replace verify_export with verify_document in CSV conversion tests

Signed-off-by: Matheus Abdias <matheusfabdias@gmail.com>

---------

Signed-off-by: Matheus Abdias <matheusfabdias@gmail.com>
2025-02-24 08:10:40 +01:00
Cesar Berrospi Ramis
1ac010354f
test: avoid testing exact JSON (#1027)
* test: avoid testing exact JSON

Avoid testing exact JSON output in html and xml backends.
Reuse the JSON verify helper function among backend test files.
Improve type annotations in html backend.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* Update tests/test_backend_patent_uspto.py

Co-authored-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

---------

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
Co-authored-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com>
2025-02-20 16:20:07 +01:00
Cesar Berrospi Ramis
428b656793
feat(xml-jats): parse XML JATS documents (#967)
* chore(xml-jats): separate authors and affiliations

In XML PubMed (JATS) backend, convert authors and affiliations as they
are typically rendered on PDFs.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* fix(xml-jats): replace new line character by a space

Instead of removing new line character from text, replace it by a space character.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* feat(xml-jats): improve existing parser and extend features

Partially support lists, respect reading order, parse more sections, support equations, better text formatting.

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

* chore(xml-jats): rename PubMed objects to JATS

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>

---------

Signed-off-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
2025-02-17 10:43:31 +01:00