import os from io import BytesIO from pathlib import Path from docling_core.types.doc import DoclingDocument from docling.datamodel.base_models import DocumentStream, InputFormat from docling.datamodel.document import ConversionResult from docling.document_converter import DocumentConverter from .test_data_gen_flag import GEN_TEST_DATA from .verify_utils import verify_document, verify_export GENERATE = GEN_TEST_DATA def get_pubmed_paths(): directory = Path(os.path.dirname(__file__) + "/data/pubmed/") xml_files = sorted(directory.rglob("*.xml")) return xml_files def get_converter(): converter = DocumentConverter(allowed_formats=[InputFormat.XML_JATS]) return converter def test_e2e_pubmed_conversions(use_stream=False): pubmed_paths = get_pubmed_paths() converter = get_converter() for pubmed_path in pubmed_paths: gt_path = ( pubmed_path.parent.parent / "groundtruth" / "docling_v2" / pubmed_path.name ) if use_stream: buf = BytesIO(pubmed_path.open("rb").read()) stream = DocumentStream(name=pubmed_path.name, stream=buf) conv_result: ConversionResult = converter.convert(stream) else: conv_result: ConversionResult = converter.convert(pubmed_path) doc: DoclingDocument = conv_result.document pred_md: str = doc.export_to_markdown() assert verify_export(pred_md, str(gt_path) + ".md"), "export to md" pred_itxt: str = doc._export_to_indented_text( max_text_len=70, explicit_tables=False ) assert verify_export(pred_itxt, str(gt_path) + ".itxt"), ( "export to indented-text" ) assert verify_document(doc, str(gt_path) + ".json", GENERATE), "export to json" def test_e2e_pubmed_conversions_stream(): test_e2e_pubmed_conversions(use_stream=True) def test_e2e_pubmed_conversions_no_stream(): test_e2e_pubmed_conversions(use_stream=False)