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* add coverage calculation and push Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * new codecov version and usage of token Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * enable ruff formatter instead of black and isort Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * apply ruff lint fixes Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * apply ruff unsafe fixes Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * add removed imports Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * runs 1 on linter issues Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * finalize linter fixes Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> * Update pyproject.toml Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com> Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com> --------- Signed-off-by: Michele Dolfi <dol@zurich.ibm.com> Signed-off-by: Michele Dolfi <97102151+dolfim-ibm@users.noreply.github.com> Co-authored-by: Cesar Berrospi Ramis <75900930+ceberam@users.noreply.github.com>
63 lines
1.9 KiB
Python
63 lines
1.9 KiB
Python
import os
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from io import BytesIO
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from pathlib import Path
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from docling_core.types.doc import DoclingDocument
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from docling.datamodel.base_models import DocumentStream, InputFormat
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from docling.datamodel.document import ConversionResult
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from docling.document_converter import DocumentConverter
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from .test_data_gen_flag import GEN_TEST_DATA
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from .verify_utils import verify_document, verify_export
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GENERATE = GEN_TEST_DATA
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def get_pubmed_paths():
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directory = Path(os.path.dirname(__file__) + "/data/pubmed/")
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xml_files = sorted(directory.rglob("*.xml"))
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return xml_files
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def get_converter():
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converter = DocumentConverter(allowed_formats=[InputFormat.XML_JATS])
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return converter
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def test_e2e_pubmed_conversions(use_stream=False):
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pubmed_paths = get_pubmed_paths()
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converter = get_converter()
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for pubmed_path in pubmed_paths:
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gt_path = (
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pubmed_path.parent.parent / "groundtruth" / "docling_v2" / pubmed_path.name
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)
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if use_stream:
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buf = BytesIO(pubmed_path.open("rb").read())
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stream = DocumentStream(name=pubmed_path.name, stream=buf)
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conv_result: ConversionResult = converter.convert(stream)
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else:
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conv_result: ConversionResult = converter.convert(pubmed_path)
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doc: DoclingDocument = conv_result.document
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pred_md: str = doc.export_to_markdown()
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assert verify_export(pred_md, str(gt_path) + ".md"), "export to md"
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pred_itxt: str = doc._export_to_indented_text(
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max_text_len=70, explicit_tables=False
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)
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assert verify_export(pred_itxt, str(gt_path) + ".itxt"), (
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"export to indented-text"
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)
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assert verify_document(doc, str(gt_path) + ".json", GENERATE), "export to json"
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def test_e2e_pubmed_conversions_stream():
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test_e2e_pubmed_conversions(use_stream=True)
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def test_e2e_pubmed_conversions_no_stream():
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test_e2e_pubmed_conversions(use_stream=False)
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