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GraphRAG
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Visualization Guide
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Initializing search
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graphrag
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Home
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Indexing
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< a href = "../prompt_tuning/overview/" class = "md-tabs__link" >
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Prompt Tuning
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Query
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Configuration
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< li class = "md-tabs__item" >
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CLI
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Extras
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< svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 24 24" > < path d = "M19.375 8.5a3.25 3.25 0 1 1-3.163 4h-3a3.252 3.252 0 0 1-4.443 2.509L7.214 17.76a3.25 3.25 0 1 1-1.342-.674l1.672-2.957A3.24 3.24 0 0 1 6.75 12c0-.907.371-1.727.97-2.316L6.117 6.846A3.253 3.253 0 0 1 1.875 3.75a3.25 3.25 0 1 1 5.526 2.32l1.603 2.836A3.25 3.25 0 0 1 13.093 11h3.119a3.25 3.25 0 0 1 3.163-2.5M10 10.25a1.75 1.75 0 1 0-.001 3.499A1.75 1.75 0 0 0 10 10.25M5.125 2a1.75 1.75 0 1 0 0 3.5 1.75 1.75 0 0 0 0-3.5m12.5 9.75a1.75 1.75 0 1 0 3.5 0 1.75 1.75 0 0 0-3.5 0m-14.25 8.5a1.75 1.75 0 1 0 3.501-.001 1.75 1.75 0 0 0-3.501.001" / > < / svg >
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GraphRAG
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graphrag
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Home
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Home
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Welcome
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Getting Started
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Development Guide
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Indexing
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< / span >
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Indexing
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< ul class = "md-nav__list" data-md-scrollfix >
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< a href = "../index/overview/" class = "md-nav__link" >
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Overview
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< li class = "md-nav__item" >
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< a href = "../index/default_dataflow/" class = "md-nav__link" >
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Dataflow
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< li class = "md-nav__item" >
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< a href = "../index/methods/" class = "md-nav__link" >
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Methods
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Inputs
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< li class = "md-nav__item" >
< a href = "../index/outputs/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
Outputs
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< / span >
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../index/byog/" class = "md-nav__link" >
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Custom Graphs
< / span >
< / a >
< / li >
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle " type = "checkbox" id = "__nav_3" >
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< label class = "md-nav__link" for = "__nav_3" id = "__nav_3_label" tabindex = "0" >
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< span class = "md-ellipsis" >
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Prompt Tuning
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< / span >
< span class = "md-nav__icon md-icon" > < / span >
< / label >
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< nav class = "md-nav" data-md-level = "1" aria-labelledby = "__nav_3_label" aria-expanded = "false" >
< label class = "md-nav__title" for = "__nav_3" >
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< span class = "md-nav__icon md-icon" > < / span >
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Prompt Tuning
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< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
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< a href = "../prompt_tuning/overview/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
Overview
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../prompt_tuning/auto_prompt_tuning/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Auto Tuning
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< / span >
< / a >
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< li class = "md-nav__item" >
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< a href = "../prompt_tuning/manual_prompt_tuning/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Manual Tuning
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< / span >
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< / ul >
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< li class = "md-nav__item md-nav__item--nested" >
< input class = "md-nav__toggle md-toggle " type = "checkbox" id = "__nav_4" >
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< label class = "md-nav__link" for = "__nav_4" id = "__nav_4_label" tabindex = "0" >
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< span class = "md-ellipsis" >
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Query
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< / span >
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< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" data-md-level = "1" aria-labelledby = "__nav_4_label" aria-expanded = "false" >
< label class = "md-nav__title" for = "__nav_4" >
< span class = "md-nav__icon md-icon" > < / span >
Query
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
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< li class = "md-nav__item" >
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< a href = "../query/overview/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Overview
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../query/global_search/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Global Search
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../query/local_search/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Local Search
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../query/drift_search/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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DRIFT Search
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../query/question_generation/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Question Generation
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< / span >
< / a >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle " type = "checkbox" id = "__nav_4_6" >
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< label class = "md-nav__link" for = "__nav_4_6" id = "__nav_4_6_label" tabindex = "0" >
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< span class = "md-ellipsis" >
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Notebooks
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< / span >
< span class = "md-nav__icon md-icon" > < / span >
< / label >
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< nav class = "md-nav" data-md-level = "2" aria-labelledby = "__nav_4_6_label" aria-expanded = "false" >
< label class = "md-nav__title" for = "__nav_4_6" >
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< span class = "md-nav__icon md-icon" > < / span >
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Notebooks
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< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
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< a href = "../query/notebooks/overview/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
Overview
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../examples_notebooks/global_search/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
Global Search
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../examples_notebooks/local_search/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
Local Search
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../examples_notebooks/drift_search/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
DRIFT Search
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< / span >
< / a >
< / li >
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< / ul >
< / nav >
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< / li >
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle " type = "checkbox" id = "__nav_5" >
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< label class = "md-nav__link" for = "__nav_5" id = "__nav_5_label" tabindex = "0" >
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< span class = "md-ellipsis" >
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Configuration
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< / span >
< span class = "md-nav__icon md-icon" > < / span >
< / label >
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< nav class = "md-nav" data-md-level = "1" aria-labelledby = "__nav_5_label" aria-expanded = "false" >
< label class = "md-nav__title" for = "__nav_5" >
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< span class = "md-nav__icon md-icon" > < / span >
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Configuration
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< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
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< a href = "../config/overview/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
Overview
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../config/init/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Init Command
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../config/yaml/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Detailed Configuration
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< / span >
< / a >
< / li >
< li class = "md-nav__item" >
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< a href = "../config/models/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Language Model Selection
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< / span >
< / a >
< / li >
< / ul >
< / nav >
< / li >
< li class = "md-nav__item" >
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< a href = "../cli/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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CLI
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< / span >
< / a >
< / li >
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< li class = "md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle " type = "checkbox" id = "__nav_7" checked >
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< label class = "md-nav__link" for = "__nav_7" id = "__nav_7_label" tabindex = "" >
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< span class = "md-ellipsis" >
Extras
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< / span >
< span class = "md-nav__icon md-icon" > < / span >
< / label >
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< nav class = "md-nav" data-md-level = "1" aria-labelledby = "__nav_7_label" aria-expanded = "true" >
< label class = "md-nav__title" for = "__nav_7" >
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< span class = "md-nav__icon md-icon" > < / span >
Extras
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
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< a href = "../blog_posts/" class = "md-nav__link" >
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< span class = "md-ellipsis" >
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Microsoft Research Blog
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< / span >
< / a >
< / li >
< li class = "md-nav__item md-nav__item--active" >
< input class = "md-nav__toggle md-toggle" type = "checkbox" id = "__toc" >
< label class = "md-nav__link md-nav__link--active" for = "__toc" >
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< span class = "md-ellipsis" >
Visualization Guide
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< / span >
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< a href = "./" class = "md-nav__link md-nav__link--active" >
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< span class = "md-ellipsis" >
Visualization Guide
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< / span >
< / a >
< nav class = "md-nav md-nav--secondary" aria-label = "Table of contents" >
< label class = "md-nav__title" for = "__toc" >
< span class = "md-nav__icon md-icon" > < / span >
Table of contents
< / label >
< ul class = "md-nav__list" data-md-component = "toc" data-md-scrollfix >
< li class = "md-nav__item" >
< a href = "#1-run-the-pipeline" class = "md-nav__link" >
< span class = "md-ellipsis" >
1. Run the Pipeline
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#2-locate-the-knowledge-graph" class = "md-nav__link" >
< span class = "md-ellipsis" >
2. Locate the Knowledge Graph
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#3-open-the-graph-in-gephi" class = "md-nav__link" >
< span class = "md-ellipsis" >
3. Open the Graph in Gephi
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#4-install-the-leiden-algorithm-plugin" class = "md-nav__link" >
< span class = "md-ellipsis" >
4. Install the Leiden Algorithm Plugin
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#5-run-statistics" class = "md-nav__link" >
< span class = "md-ellipsis" >
5. Run Statistics
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#6-color-the-graph-by-clusters" class = "md-nav__link" >
< span class = "md-ellipsis" >
6. Color the Graph by Clusters
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#7-resize-nodes-by-degree-centrality" class = "md-nav__link" >
< span class = "md-ellipsis" >
7. Resize Nodes by Degree Centrality
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#8-layout-the-graph" class = "md-nav__link" >
< span class = "md-ellipsis" >
8. Layout the Graph
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#9-run-forceatlas2" class = "md-nav__link" >
< span class = "md-ellipsis" >
9. Run ForceAtlas2
< / span >
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "#10-add-text-labels-optional" class = "md-nav__link" >
< span class = "md-ellipsis" >
10. Add Text Labels (Optional)
< / span >
< / a >
< / li >
< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle " type = "checkbox" id = "__nav_7_3" >
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< label class = "md-nav__link" for = "__nav_7_3" id = "__nav_7_3_label" tabindex = "0" >
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< span class = "md-ellipsis" >
Operation Dulce
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< / span >
< span class = "md-nav__icon md-icon" > < / span >
< / label >
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< nav class = "md-nav" data-md-level = "2" aria-labelledby = "__nav_7_3_label" aria-expanded = "false" >
< label class = "md-nav__title" for = "__nav_7_3" >
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< span class = "md-nav__icon md-icon" > < / span >
Operation Dulce
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< ul class = "md-nav__list" data-md-scrollfix >
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Table of contents
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1. Run the Pipeline
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2. Locate the Knowledge Graph
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3. Open the Graph in Gephi
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4. Install the Leiden Algorithm Plugin
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5. Run Statistics
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6. Color the Graph by Clusters
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7. Resize Nodes by Degree Centrality
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8. Layout the Graph
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9. Run ForceAtlas2
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< h1 id = "visualizing-and-debugging-your-knowledge-graph" > Visualizing and Debugging Your Knowledge Graph< / h1 >
< p > The following step-by-step guide walks through the process to visualize a knowledge graph after it's been constructed by graphrag. Note that some of the settings recommended below are based on our own experience of what works well. Feel free to change and explore other settings for a better visualization experience!< / p >
< h2 id = "1-run-the-pipeline" > 1. Run the Pipeline< / h2 >
< p > Before building an index, please review your < code > settings.yaml< / code > configuration file and ensure that graphml snapshots is enabled.
< div class = "highlight" > < pre > < span > < / span > < code > < a id = "__codelineno-0-1" name = "__codelineno-0-1" href = "#__codelineno-0-1" > < / a > < span class = "nt" > snapshots< / span > < span class = "p" > :< / span >
< a id = "__codelineno-0-2" name = "__codelineno-0-2" href = "#__codelineno-0-2" > < / a > < span class = "w" > < / span > < span class = "nt" > graphml< / span > < span class = "p" > :< / span > < span class = "w" > < / span > < span class = "l l-Scalar l-Scalar-Plain" > true< / span >
< / code > < / pre > < / div >
(Optional) To support other visualization tools and exploration, additional parameters can be enabled that provide access to vector embeddings.
< div class = "highlight" > < pre > < span > < / span > < code > < a id = "__codelineno-1-1" name = "__codelineno-1-1" href = "#__codelineno-1-1" > < / a > < span class = "nt" > embed_graph< / span > < span class = "p" > :< / span >
< a id = "__codelineno-1-2" name = "__codelineno-1-2" href = "#__codelineno-1-2" > < / a > < span class = "w" > < / span > < span class = "nt" > enabled< / span > < span class = "p" > :< / span > < span class = "w" > < / span > < span class = "l l-Scalar l-Scalar-Plain" > true< / span > < span class = "w" > < / span > < span class = "c1" > # will generate node2vec embeddings for nodes< / span >
< a id = "__codelineno-1-3" name = "__codelineno-1-3" href = "#__codelineno-1-3" > < / a > < span class = "nt" > umap< / span > < span class = "p" > :< / span >
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< a id = "__codelineno-1-4" name = "__codelineno-1-4" href = "#__codelineno-1-4" > < / a > < span class = "w" > < / span > < span class = "nt" > enabled< / span > < span class = "p" > :< / span > < span class = "w" > < / span > < span class = "l l-Scalar l-Scalar-Plain" > true< / span > < span class = "w" > < / span > < span class = "c1" > # will generate UMAP embeddings for nodes, giving the entities table an x/y position to plot< / span >
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< / code > < / pre > < / div >
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After running the indexing pipeline over your data, there will be an output folder (defined by the < code > storage.base_dir< / code > setting).< / p >
< ul >
< li > < strong > Output Folder< / strong > : Contains artifacts from the LLM’ < / li >
< / ul >
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< h2 id = "2-locate-the-knowledge-graph" > 2. Locate the Knowledge Graph< / h2 >
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< p > In the output folder, look for a file named < code > graph.graphml< / code > . graphml is a standard < a href = "http://graphml.graphdrawing.org" > file format< / a > supported by many visualization tools. We recommend trying < a href = "https://gephi.org" > Gephi< / a > .< / p >
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< h2 id = "3-open-the-graph-in-gephi" > 3. Open the Graph in Gephi< / h2 >
< ol >
< li > Install and open Gephi< / li >
< li > Navigate to the < code > output< / code > folder containing the various parquet files.< / li >
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< li > Import the < code > graph.graphml< / code > file into Gephi. This will result in a fairly plain view of the undirected graph nodes and edges.< / li >
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< / ol >
< p align = "center" >
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< img src = "../img/viz_guide/gephi-initial-graph-example.png" alt = "A basic graph visualization by Gephi" width = "300" / >
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< / p >
< h2 id = "4-install-the-leiden-algorithm-plugin" > 4. Install the Leiden Algorithm Plugin< / h2 >
< ol >
< li > Go to < code > Tools< / code > -> < code > Plugins< / code > .< / li >
< li > Search for "Leiden Algorithm".< / li >
< li > Click < code > Install< / code > and restart Gephi.< / li >
< / ol >
< h2 id = "5-run-statistics" > 5. Run Statistics< / h2 >
< ol >
< li > In the < code > Statistics< / code > tab on the right, click < code > Run< / code > for < code > Average Degree< / code > and < code > Leiden Algorithm< / code > .< / li >
< / ol >
< p align = "center" >
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< img src = "../img/viz_guide/gephi-network-overview-settings.png" alt = "A view of Gephi's network overview settings" width = "300" / >
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< / p >
< ol >
< li > For the Leiden Algorithm, adjust the settings:< / li >
< li > < strong > Quality function< / strong > : Modularity< / li >
< li > < strong > Resolution< / strong > : 1< / li >
< / ol >
< h2 id = "6-color-the-graph-by-clusters" > 6. Color the Graph by Clusters< / h2 >
< ol >
< li > Go to the < code > Appearance< / code > pane in the upper left side of Gephi.< / li >
< / ol >
< p align = "center" >
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< img src = "../img/viz_guide/gephi-appearance-pane.png" alt = "A view of Gephi's appearance pane" width = "500" / >
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< / p >
< ol >
< li > Select < code > Nodes< / code > , then < code > Partition< / code > , and click the color palette icon in the upper right.< / li >
< li > Choose < code > Cluster< / code > from the dropdown.< / li >
< li > Click the < code > Palette...< / code > hyperlink, then < code > Generate...< / code > .< / li >
< li > Uncheck < code > Limit number of colors< / code > , click < code > Generate< / code > , and then < code > Ok< / code > .< / li >
< li > Click < code > Apply< / code > to color the graph. This will color the graph based on the partitions discovered by Leiden.< / li >
< / ol >
< h2 id = "7-resize-nodes-by-degree-centrality" > 7. Resize Nodes by Degree Centrality< / h2 >
< ol >
< li > In the < code > Appearance< / code > pane in the upper left, select < code > Nodes< / code > -> < code > Ranking< / code > < / li >
< li > Select the < code > Sizing< / code > icon in the upper right.< / li >
< li > Choose < code > Degree< / code > and set:< / li >
< li > < strong > Min< / strong > : 10< / li >
< li > < strong > Max< / strong > : 150< / li >
< li > Click < code > Apply< / code > .< / li >
< / ol >
< h2 id = "8-layout-the-graph" > 8. Layout the Graph< / h2 >
< ol >
< li > In the < code > Layout< / code > tab in the lower left, select < code > OpenORD< / code > .< / li >
< / ol >
< p align = "center" >
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< img src = "../img/viz_guide/gephi-layout-pane.png" alt = "A view of Gephi's layout pane" width = "400" / >
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< / p >
< ol >
< li > Set < code > Liquid< / code > and < code > Expansion< / code > stages to 50, and everything else to 0.< / li >
< li > Click < code > Run< / code > and monitor the progress.< / li >
< / ol >
< h2 id = "9-run-forceatlas2" > 9. Run ForceAtlas2< / h2 >
< ol >
< li > Select < code > Force Atlas 2< / code > in the layout options.< / li >
< / ol >
< p align = "center" >
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< img src = "../img/viz_guide/gephi-layout-forceatlas2-pane.png" alt = "A view of Gephi's ForceAtlas2 layout pane" width = "400" / >
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< / p >
< ol >
< li > Adjust the settings:< / li >
< li > < strong > Scaling< / strong > : 15< / li >
< li > < strong > Dissuade Hubs< / strong > : checked< / li >
< li > < strong > LinLog mode< / strong > : uncheck< / li >
< li > < strong > Prevent Overlap< / strong > : checked< / li >
< li > Click < code > Run< / code > and wait.< / li >
< li > Press < code > Stop< / code > when it looks like the graph nodes have settled and no longer change position significantly.< / li >
< / ol >
< h2 id = "10-add-text-labels-optional" > 10. Add Text Labels (Optional)< / h2 >
< ol >
< li > Turn on text labels in the appropriate section.< / li >
< li > Configure and resize them as needed.< / li >
< / ol >
< p > Your final graph should now be visually organized and ready for analysis!< / p >
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