graphrag/tests/verbs/test_generate_text_embeddings.py

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# Copyright (c) 2024 Microsoft Corporation.
# Licensed under the MIT License
from graphrag.callbacks.noop_workflow_callbacks import NoopWorkflowCallbacks
from graphrag.config.create_graphrag_config import create_graphrag_config
Refactor config (#1593) * Refactor config - Add new ModelConfig to represent LLM settings - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode - Add top level models config that is a list of available LLM ModelConfigs - Remove LLMConfig inheritance and delete LLMConfig - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config - Remove all fallbacks and hydration logic from create_graphrag_config - This removes the automatic env variable overrides - Support env variables within config files using Templating - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$" - Update init content to initialize new config file with the ModelConfig structure * Use dict of ModelConfig instead of list * Add model validations and unit tests * Fix ruff checks * Add semversioner change * Fix unit tests * validate root_dir in pydantic model * Rename ModelConfig to LanguageModelConfig * Rename ModelConfigMissingError to LanguageModelConfigMissingError * Add validationg for unexpected API keys * Allow skipping pydantic validation for testing/mocking purposes. * Add default lm configs to verb tests * smoke test * remove config from flows to fix llm arg mapping * Fix embedding llm arg mapping * Remove timestamp from smoke test outputs * Remove unused "subworkflows" smoke test properties * Add models to smoke test configs * Update smoke test output path * Send logs to logs folder * Fix output path * Fix csv test file pattern * Update placeholder * Format * Instantiate default model configs * Fix unit tests for config defaults * Fix migration notebook * Remove create_pipeline_config * Remove several unused config models * Remove indexing embedding and input configs * Move embeddings function to config * Remove skip_workflows * Remove skip embeddings in favor of explicit naming * fix unit test spelling mistake * self.models[model_id] is already a language model. Remove redundant casting. * update validation errors to instruct users to rerun graphrag init * instantiate LanguageModelConfigs with validation * skip validation in unit tests * update verb tests to use default model settings instead of skipping validation * test using llm settings * cleanup verb tests * remove unsafe default model config * remove the ability to skip pydantic validation * remove None union types when default values are set * move vector_store from embeddings to top level of config and delete resolve_paths * update vector store settings * fix vector store and smoke tests * fix serializing vector_store settings * fix vector_store usage * fix vector_store type * support cli overrides for loading graphrag config * rename storage to output * Add --force flag to init * Remove run_id and resume, fix Drift config assignment * Ruff --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com> Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 15:52:06 -08:00
from graphrag.config.embeddings import (
all_embeddings,
)
from graphrag.config.enums import ModelType, TextEmbeddingTarget
from graphrag.index.operations.embed_text.embed_text import TextEmbedStrategyType
from graphrag.index.workflows.generate_text_embeddings import (
run_workflow,
)
from graphrag.utils.storage import load_table_from_storage
from .util import (
Refactor config (#1593) * Refactor config - Add new ModelConfig to represent LLM settings - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode - Add top level models config that is a list of available LLM ModelConfigs - Remove LLMConfig inheritance and delete LLMConfig - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config - Remove all fallbacks and hydration logic from create_graphrag_config - This removes the automatic env variable overrides - Support env variables within config files using Templating - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$" - Update init content to initialize new config file with the ModelConfig structure * Use dict of ModelConfig instead of list * Add model validations and unit tests * Fix ruff checks * Add semversioner change * Fix unit tests * validate root_dir in pydantic model * Rename ModelConfig to LanguageModelConfig * Rename ModelConfigMissingError to LanguageModelConfigMissingError * Add validationg for unexpected API keys * Allow skipping pydantic validation for testing/mocking purposes. * Add default lm configs to verb tests * smoke test * remove config from flows to fix llm arg mapping * Fix embedding llm arg mapping * Remove timestamp from smoke test outputs * Remove unused "subworkflows" smoke test properties * Add models to smoke test configs * Update smoke test output path * Send logs to logs folder * Fix output path * Fix csv test file pattern * Update placeholder * Format * Instantiate default model configs * Fix unit tests for config defaults * Fix migration notebook * Remove create_pipeline_config * Remove several unused config models * Remove indexing embedding and input configs * Move embeddings function to config * Remove skip_workflows * Remove skip embeddings in favor of explicit naming * fix unit test spelling mistake * self.models[model_id] is already a language model. Remove redundant casting. * update validation errors to instruct users to rerun graphrag init * instantiate LanguageModelConfigs with validation * skip validation in unit tests * update verb tests to use default model settings instead of skipping validation * test using llm settings * cleanup verb tests * remove unsafe default model config * remove the ability to skip pydantic validation * remove None union types when default values are set * move vector_store from embeddings to top level of config and delete resolve_paths * update vector store settings * fix vector store and smoke tests * fix serializing vector_store settings * fix vector_store usage * fix vector_store type * support cli overrides for loading graphrag config * rename storage to output * Add --force flag to init * Remove run_id and resume, fix Drift config assignment * Ruff --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com> Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 15:52:06 -08:00
DEFAULT_MODEL_CONFIG,
create_test_context,
)
async def test_generate_text_embeddings():
context = await create_test_context(
storage=[
"documents",
"relationships",
"text_units",
"entities",
"community_reports",
]
)
Refactor config (#1593) * Refactor config - Add new ModelConfig to represent LLM settings - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode - Add top level models config that is a list of available LLM ModelConfigs - Remove LLMConfig inheritance and delete LLMConfig - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config - Remove all fallbacks and hydration logic from create_graphrag_config - This removes the automatic env variable overrides - Support env variables within config files using Templating - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$" - Update init content to initialize new config file with the ModelConfig structure * Use dict of ModelConfig instead of list * Add model validations and unit tests * Fix ruff checks * Add semversioner change * Fix unit tests * validate root_dir in pydantic model * Rename ModelConfig to LanguageModelConfig * Rename ModelConfigMissingError to LanguageModelConfigMissingError * Add validationg for unexpected API keys * Allow skipping pydantic validation for testing/mocking purposes. * Add default lm configs to verb tests * smoke test * remove config from flows to fix llm arg mapping * Fix embedding llm arg mapping * Remove timestamp from smoke test outputs * Remove unused "subworkflows" smoke test properties * Add models to smoke test configs * Update smoke test output path * Send logs to logs folder * Fix output path * Fix csv test file pattern * Update placeholder * Format * Instantiate default model configs * Fix unit tests for config defaults * Fix migration notebook * Remove create_pipeline_config * Remove several unused config models * Remove indexing embedding and input configs * Move embeddings function to config * Remove skip_workflows * Remove skip embeddings in favor of explicit naming * fix unit test spelling mistake * self.models[model_id] is already a language model. Remove redundant casting. * update validation errors to instruct users to rerun graphrag init * instantiate LanguageModelConfigs with validation * skip validation in unit tests * update verb tests to use default model settings instead of skipping validation * test using llm settings * cleanup verb tests * remove unsafe default model config * remove the ability to skip pydantic validation * remove None union types when default values are set * move vector_store from embeddings to top level of config and delete resolve_paths * update vector store settings * fix vector store and smoke tests * fix serializing vector_store settings * fix vector_store usage * fix vector_store type * support cli overrides for loading graphrag config * rename storage to output * Add --force flag to init * Remove run_id and resume, fix Drift config assignment * Ruff --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com> Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 15:52:06 -08:00
config = create_graphrag_config({"models": DEFAULT_MODEL_CONFIG})
llm_settings = config.get_language_model_config(
config.embed_text.model_id
Refactor config (#1593) * Refactor config - Add new ModelConfig to represent LLM settings - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode - Add top level models config that is a list of available LLM ModelConfigs - Remove LLMConfig inheritance and delete LLMConfig - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config - Remove all fallbacks and hydration logic from create_graphrag_config - This removes the automatic env variable overrides - Support env variables within config files using Templating - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$" - Update init content to initialize new config file with the ModelConfig structure * Use dict of ModelConfig instead of list * Add model validations and unit tests * Fix ruff checks * Add semversioner change * Fix unit tests * validate root_dir in pydantic model * Rename ModelConfig to LanguageModelConfig * Rename ModelConfigMissingError to LanguageModelConfigMissingError * Add validationg for unexpected API keys * Allow skipping pydantic validation for testing/mocking purposes. * Add default lm configs to verb tests * smoke test * remove config from flows to fix llm arg mapping * Fix embedding llm arg mapping * Remove timestamp from smoke test outputs * Remove unused "subworkflows" smoke test properties * Add models to smoke test configs * Update smoke test output path * Send logs to logs folder * Fix output path * Fix csv test file pattern * Update placeholder * Format * Instantiate default model configs * Fix unit tests for config defaults * Fix migration notebook * Remove create_pipeline_config * Remove several unused config models * Remove indexing embedding and input configs * Move embeddings function to config * Remove skip_workflows * Remove skip embeddings in favor of explicit naming * fix unit test spelling mistake * self.models[model_id] is already a language model. Remove redundant casting. * update validation errors to instruct users to rerun graphrag init * instantiate LanguageModelConfigs with validation * skip validation in unit tests * update verb tests to use default model settings instead of skipping validation * test using llm settings * cleanup verb tests * remove unsafe default model config * remove the ability to skip pydantic validation * remove None union types when default values are set * move vector_store from embeddings to top level of config and delete resolve_paths * update vector store settings * fix vector store and smoke tests * fix serializing vector_store settings * fix vector_store usage * fix vector_store type * support cli overrides for loading graphrag config * rename storage to output * Add --force flag to init * Remove run_id and resume, fix Drift config assignment * Ruff --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com> Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 15:52:06 -08:00
).model_dump()
llm_settings["type"] = ModelType.MockEmbedding
Refactor config (#1593) * Refactor config - Add new ModelConfig to represent LLM settings - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode - Add top level models config that is a list of available LLM ModelConfigs - Remove LLMConfig inheritance and delete LLMConfig - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config - Remove all fallbacks and hydration logic from create_graphrag_config - This removes the automatic env variable overrides - Support env variables within config files using Templating - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$" - Update init content to initialize new config file with the ModelConfig structure * Use dict of ModelConfig instead of list * Add model validations and unit tests * Fix ruff checks * Add semversioner change * Fix unit tests * validate root_dir in pydantic model * Rename ModelConfig to LanguageModelConfig * Rename ModelConfigMissingError to LanguageModelConfigMissingError * Add validationg for unexpected API keys * Allow skipping pydantic validation for testing/mocking purposes. * Add default lm configs to verb tests * smoke test * remove config from flows to fix llm arg mapping * Fix embedding llm arg mapping * Remove timestamp from smoke test outputs * Remove unused "subworkflows" smoke test properties * Add models to smoke test configs * Update smoke test output path * Send logs to logs folder * Fix output path * Fix csv test file pattern * Update placeholder * Format * Instantiate default model configs * Fix unit tests for config defaults * Fix migration notebook * Remove create_pipeline_config * Remove several unused config models * Remove indexing embedding and input configs * Move embeddings function to config * Remove skip_workflows * Remove skip embeddings in favor of explicit naming * fix unit test spelling mistake * self.models[model_id] is already a language model. Remove redundant casting. * update validation errors to instruct users to rerun graphrag init * instantiate LanguageModelConfigs with validation * skip validation in unit tests * update verb tests to use default model settings instead of skipping validation * test using llm settings * cleanup verb tests * remove unsafe default model config * remove the ability to skip pydantic validation * remove None union types when default values are set * move vector_store from embeddings to top level of config and delete resolve_paths * update vector store settings * fix vector store and smoke tests * fix serializing vector_store settings * fix vector_store usage * fix vector_store type * support cli overrides for loading graphrag config * rename storage to output * Add --force flag to init * Remove run_id and resume, fix Drift config assignment * Ruff --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com> Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 15:52:06 -08:00
config.embed_text.strategy = {
"type": TextEmbedStrategyType.openai,
Refactor config (#1593) * Refactor config - Add new ModelConfig to represent LLM settings - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode - Add top level models config that is a list of available LLM ModelConfigs - Remove LLMConfig inheritance and delete LLMConfig - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config - Remove all fallbacks and hydration logic from create_graphrag_config - This removes the automatic env variable overrides - Support env variables within config files using Templating - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$" - Update init content to initialize new config file with the ModelConfig structure * Use dict of ModelConfig instead of list * Add model validations and unit tests * Fix ruff checks * Add semversioner change * Fix unit tests * validate root_dir in pydantic model * Rename ModelConfig to LanguageModelConfig * Rename ModelConfigMissingError to LanguageModelConfigMissingError * Add validationg for unexpected API keys * Allow skipping pydantic validation for testing/mocking purposes. * Add default lm configs to verb tests * smoke test * remove config from flows to fix llm arg mapping * Fix embedding llm arg mapping * Remove timestamp from smoke test outputs * Remove unused "subworkflows" smoke test properties * Add models to smoke test configs * Update smoke test output path * Send logs to logs folder * Fix output path * Fix csv test file pattern * Update placeholder * Format * Instantiate default model configs * Fix unit tests for config defaults * Fix migration notebook * Remove create_pipeline_config * Remove several unused config models * Remove indexing embedding and input configs * Move embeddings function to config * Remove skip_workflows * Remove skip embeddings in favor of explicit naming * fix unit test spelling mistake * self.models[model_id] is already a language model. Remove redundant casting. * update validation errors to instruct users to rerun graphrag init * instantiate LanguageModelConfigs with validation * skip validation in unit tests * update verb tests to use default model settings instead of skipping validation * test using llm settings * cleanup verb tests * remove unsafe default model config * remove the ability to skip pydantic validation * remove None union types when default values are set * move vector_store from embeddings to top level of config and delete resolve_paths * update vector store settings * fix vector store and smoke tests * fix serializing vector_store settings * fix vector_store usage * fix vector_store type * support cli overrides for loading graphrag config * rename storage to output * Add --force flag to init * Remove run_id and resume, fix Drift config assignment * Ruff --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com> Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 15:52:06 -08:00
"llm": llm_settings,
}
config.embed_text.target = TextEmbeddingTarget.all
config.snapshots.embeddings = True
await run_workflow(
config,
context,
NoopWorkflowCallbacks(),
)
parquet_files = context.storage.keys()
for field in all_embeddings:
assert f"embeddings.{field}.parquet" in parquet_files
# entity description should always be here, let's assert its format
entity_description_embeddings = await load_table_from_storage(
"embeddings.entity.description", context.storage
)
assert len(entity_description_embeddings.columns) == 2
assert "id" in entity_description_embeddings.columns
assert "embedding" in entity_description_embeddings.columns
# every other embedding is optional but we've turned them all on, so check a random one
document_text_embeddings = await load_table_from_storage(
"embeddings.document.text", context.storage
)
Artifact cleanup (#1341) * Add source documents for verb tests * Remove entity_type erroneous column * Add new test data * Remove source/target degree columns * Remove top_level_node_id * Remove chunk column configs * Rename "chunk" to "text" * Rename "chunk" to "text" in base * Re-map document input to use base text units * Revert base text units as final documents dep * Update test data * Split/rename node source_id * Drop node size (dup of degree) * Drop document_ids from covariates * Remove unused document_ids from models * Remove n_tokens from covariate table * Fix missed document_ids delete * Wire base text units to final documents * Rename relationship rank as combined_degree * Add rank as first-class property to Relationship * Remove split_text operation * Fix relationships test parquet * Update test parquets * Add entity ids to community table * Remove stored graph embedding columns * Format * Semver * Fix JSON typo * Spelling * Rename lancedb * Sort lancedb * Fix unit test * Fix test to account for changing period * Update tests for separate embeddings * Format * Better assertion printing * Fix unit test for windows * Rename document.raw_content -> document.text * Remove read_documents function * Remove unused document summary from model * Remove unused imports * Format * Add new snapshots to default init * Use util to construct embeddings collection name * Align inc index model with branch changes * Update data and tests for int ids * Clean up embedding locs * Switch entity "name" to "title" for consistency * Fix short_id -> human_readable_id defaults * Format * Rework community IDs * Fix community size compute * Fix unit tests * Fix report read * Pare down nodes table output * Fix unit test * Fix merge * Fix community loading * Format * Fix community id report extraction * Update tests * Consistent short IDs and ordering * Update ordering and tests * Update incremental for new nodes model * Guard document columns loc * Match column ordering * Fix document guard * Update smoke tests * Fill NA on community extract * Logging for smoke test debug * Add parquet schema details doc * Fix community hierarchy guard * Use better empty hierarchy guard * Back-compat shims * Semver * Fix warning * Format * Remove default fallback * Reuse key
2024-11-13 15:11:19 -08:00
assert len(document_text_embeddings.columns) == 2
assert "id" in document_text_embeddings.columns
assert "embedding" in document_text_embeddings.columns