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Fix file path issue in the viz guide (#1372)

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* Fix a file paths issue in the viz guide.

* fix formatting
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Josh Bradley 2024-11-06 14:42:07 -08:00 committed by GitHub
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4
.semversioner/next-release/patch-20241106193551070554.json Normal file
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@ -0,0 +1,4 @@
{
"type": "patch",
"description": "Fix a file paths issue in the viz guide."
}

11
docs/visualization_guide.md
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@ -16,6 +16,7 @@ umap:
enabled: true # will generate UMAP embeddings for nodes
```
After running the indexing pipeline over your data, there will be an output folder (defined by the `storage.base_dir` setting).
- **Output Folder**: Contains artifacts from the LLM’s indexing pass.
## 2. Locate the Knowledge Graph
@ -27,7 +28,7 @@ In the output folder, look for a file named `merged_graph.graphml`. graphml is a
3. Import the `merged_graph.graphml` file into Gephi. This will result in a fairly plain view of the undirected graph nodes and edges.
<p align="center">
<img src="img/viz_guide/gephi-initial-graph-example.png" alt="A basic graph visualization by Gephi" width="300"/>
<img src="../img/viz_guide/gephi-initial-graph-example.png" alt="A basic graph visualization by Gephi" width="300"/>
</p>
## 4. Install the Leiden Algorithm Plugin
@ -39,7 +40,7 @@ In the output folder, look for a file named `merged_graph.graphml`. graphml is a
1. In the `Statistics` tab on the right, click `Run` for `Average Degree` and `Leiden Algorithm`.
<p align="center">
<img src="img/viz_guide/gephi-network-overview-settings.png" alt="A view of Gephi's network overview settings" width="300"/>
<img src="../img/viz_guide/gephi-network-overview-settings.png" alt="A view of Gephi's network overview settings" width="300"/>
</p>
2. For the Leiden Algorithm, adjust the settings:
@ -50,7 +51,7 @@ In the output folder, look for a file named `merged_graph.graphml`. graphml is a
1. Go to the `Appearance` pane in the upper left side of Gephi.
<p align="center">
<img src="img/viz_guide/gephi-appearance-pane.png" alt="A view of Gephi's appearance pane" width="500"/>
<img src="../img/viz_guide/gephi-appearance-pane.png" alt="A view of Gephi's appearance pane" width="500"/>
</p>
2. Select `Nodes`, then `Partition`, and click the color palette icon in the upper right.
@ -71,7 +72,7 @@ In the output folder, look for a file named `merged_graph.graphml`. graphml is a
1. In the `Layout` tab in the lower left, select `OpenORD`.
<p align="center">
<img src="img/viz_guide/gephi-layout-pane.png" alt="A view of Gephi's layout pane" width="400"/>
<img src="../img/viz_guide/gephi-layout-pane.png" alt="A view of Gephi's layout pane" width="400"/>
</p>
2. Set `Liquid` and `Expansion` stages to 50, and everything else to 0.
@ -81,7 +82,7 @@ In the output folder, look for a file named `merged_graph.graphml`. graphml is a
1. Select `Force Atlas 2` in the layout options.
<p align="center">
<img src="img/viz_guide/gephi-layout-forceatlas2-pane.png" alt="A view of Gephi's ForceAtlas2 layout pane" width="400"/>
<img src="../img/viz_guide/gephi-layout-forceatlas2-pane.png" alt="A view of Gephi's ForceAtlas2 layout pane" width="400"/>
</p>
2. Adjust the settings: