7 Commits

Author	SHA1	Message	Date
Nathan Evans	a35cb12741	Remove datashaper strip code (#1581) ... Remove datashaper	2025-01-03 13:59:26 -08:00
Nathan Evans	d17dfd01f9	Graph collapse (#1464) ... * Refactor graph creation * Semver * Spellcheck * Update integ pipeline * Fix cast * Improve pandas chaining * Cleaner apply * Use list comprehensions --------- Co-authored-by: Alonso Guevara <alonsog@microsoft.com>	2024-12-05 11:57:26 -06:00
Nathan Evans	c8c354e357	Artifact cleanup (#1341) ... * Add source documents for verb tests * Remove entity_type erroneous column * Add new test data * Remove source/target degree columns * Remove top_level_node_id * Remove chunk column configs * Rename "chunk" to "text" * Rename "chunk" to "text" in base * Re-map document input to use base text units * Revert base text units as final documents dep * Update test data * Split/rename node source_id * Drop node size (dup of degree) * Drop document_ids from covariates * Remove unused document_ids from models * Remove n_tokens from covariate table * Fix missed document_ids delete * Wire base text units to final documents * Rename relationship rank as combined_degree * Add rank as first-class property to Relationship * Remove split_text operation * Fix relationships test parquet * Update test parquets * Add entity ids to community table * Remove stored graph embedding columns * Format * Semver * Fix JSON typo * Spelling * Rename lancedb * Sort lancedb * Fix unit test * Fix test to account for changing period * Update tests for separate embeddings * Format * Better assertion printing * Fix unit test for windows * Rename document.raw_content -> document.text * Remove read_documents function * Remove unused document summary from model * Remove unused imports * Format * Add new snapshots to default init * Use util to construct embeddings collection name * Align inc index model with branch changes * Update data and tests for int ids * Clean up embedding locs * Switch entity "name" to "title" for consistency * Fix short_id -> human_readable_id defaults * Format * Rework community IDs * Fix community size compute * Fix unit tests * Fix report read * Pare down nodes table output * Fix unit test * Fix merge * Fix community loading * Format * Fix community id report extraction * Update tests * Consistent short IDs and ordering * Update ordering and tests * Update incremental for new nodes model * Guard document columns loc * Match column ordering * Fix document guard * Update smoke tests * Fill NA on community extract * Logging for smoke test debug * Add parquet schema details doc * Fix community hierarchy guard * Use better empty hierarchy guard * Back-compat shims * Semver * Fix warning * Format * Remove default fallback * Reuse key	2024-11-13 15:11:19 -08:00
Alonso Guevara	7235c6faf5	Add Incremental Indexing v1 (#1318) ... * Create entypoint for cli and api (#1067) * Add cli and api entrypoints for update index * Semver * Update docs * Run tests on feature branch main * Better /main handling in tests * Incremental indexing/file delta (#1123) * Calculate new inputs and deleted inputs on update * Semver * Clear ruff checks * Fix pyright * Fix PyRight * Ruff again * Update relationships after inc index (#1236) * Collapse create final community reports (#1227) * Remove extraneous param * Add community report mocking assertions * Collapse primary report generation * Collapse embeddings * Format * Semver * Remove extraneous check * Move option set * Collapse create base entity graph (#1233) * Collapse create_base_entity_graph * Format/typing * Semver * Fix smoke tests * Simplify assignment * Collapse create summarized entities (#1237) * Collapse entity summarize * Semver * Collapse create base extracted entities (#1235) * Set up base assertions * Replace entity_extract * Finish collapsing workflow * Semver * Update snoke tests * Incremental indexing/update final text units (#1241) * Update final text units * Format * Address comments * Add v1 community merge using time period (#1257) * Add naive community merge using time period * formatting * Query fixes * Add descriptions from merged_entities * Add summarization and embeddings * Use iso format * Ruff * Pyright and smoke tests * Pyright * Pyright * Update parquet for verb tests * Fix smoke tests * Remove sorting * Update smoke tests * Smoke tests * Smoke tests * Updated verb test to ack for latest changes on covariates * Add config for incremental index + Bug fixes (#1317) * Add config for incremental index + Bug fixes * Ruff * Fix smoke tests * Semversioner * Small refactor * Remove unused file * Ruff * Update verb tests inputs * Update verb tests inputs --------- Co-authored-by: Nathan Evans <github@talkswithnumbers.com>	2024-10-30 11:59:44 -06:00
Nathan Evans	94f1e62e5c	Rework workflow architecture (#1311) ... * Rename pipeline_storage file * Add runtime storage option to context * Fix import * Switch to memory storage for runtime * Infra for workflow runtime storage * Migrate base_text_units to runtime storage * Fix comment * Semver * Remove whitespace * Remove subflow smoke tests and ignore transient artifacts * Remove entity graph from transient list (not yet implemented) * Increase smoke runtime allotment for create_base_entity_graph * Revert format fix * Remove noqa	2024-10-24 10:20:03 -07:00
Nathan Evans	61b3d6d56a	Migrate helper verbs (#1248) ... * Remove genid * Move snapshot_rows * Move snapshot * Delete spread_json * Delete unzip * Delete zip * Move unpack_graph * Move compute_edge_combined_degree * Delete create_graph * Delete concat * Delete text replace * Delete text_translate * Move text_split * Inline aggregate override * Move cluster_graph * Move merge_graphs * Semver * Move text_chunk * Move layout_graph and fix some __init__s * Move extract_covariates * Rename text_split -> split_text * Move extract_entities * Move summarize_descriptions * Rename text_chunk -> chunk_text * Move community report creation * Remove verb-level packing operators * Streamline some naming * Streamline param name/order * Move mock LLM data to tests * Fixed missed rename * Update some strategy refs * Rename run_gi * Inject mock responses into integ test config	2024-10-09 13:46:44 -07:00
Nathan Evans	73e709b686	Collapse create final covariates (#1215) ... * Add covariate test * Add detailed mock assertions * Collapse create_final_covariates * Delete unused doc_id field * Semver * Update smoke test * Remove unused subject/object type columns	2024-09-25 16:30:22 -07:00