6 Commits

Author SHA1 Message Date
Nathan Evans
c8c354e357
Artifact cleanup (#1341)
* Add source documents for verb tests

* Remove entity_type erroneous column

* Add new test data

* Remove source/target degree columns

* Remove top_level_node_id

* Remove chunk column configs

* Rename "chunk" to "text"

* Rename "chunk" to "text" in base

* Re-map document input to use base text units

* Revert base text units as final documents dep

* Update test data

* Split/rename node source_id

* Drop node size (dup of degree)

* Drop document_ids from covariates

* Remove unused document_ids from models

* Remove n_tokens from covariate table

* Fix missed document_ids delete

* Wire base text units to final documents

* Rename relationship rank as combined_degree

* Add rank as first-class property to Relationship

* Remove split_text operation

* Fix relationships test parquet

* Update test parquets

* Add entity ids to community table

* Remove stored graph embedding columns

* Format

* Semver

* Fix JSON typo

* Spelling

* Rename lancedb

* Sort lancedb

* Fix unit test

* Fix test to account for changing period

* Update tests for separate embeddings

* Format

* Better assertion printing

* Fix unit test for windows

* Rename document.raw_content -> document.text

* Remove read_documents function

* Remove unused document summary from model

* Remove unused imports

* Format

* Add new snapshots to default init

* Use util to construct embeddings collection name

* Align inc index model with branch changes

* Update data and tests for int ids

* Clean up embedding locs

* Switch entity "name" to "title" for consistency

* Fix short_id -> human_readable_id defaults

* Format

* Rework community IDs

* Fix community size compute

* Fix unit tests

* Fix report read

* Pare down nodes table output

* Fix unit test

* Fix merge

* Fix community loading

* Format

* Fix community id report extraction

* Update tests

* Consistent short IDs and ordering

* Update ordering and tests

* Update incremental for new nodes model

* Guard document columns loc

* Match column ordering

* Fix document guard

* Update smoke tests

* Fill NA on community extract

* Logging for smoke test debug

* Add parquet schema details doc

* Fix community hierarchy guard

* Use better empty hierarchy guard

* Back-compat shims

* Semver

* Fix warning

* Format

* Remove default fallback

* Reuse key
2024-11-13 15:11:19 -08:00
gaudyb
17658c5df8
New workflow to generate embeddings in a single workflow (#1296)
* New workflow to generate embeddings in a single workflow

* New workflow to generate embeddings in a single workflow

* version change

* clean tests without any embeddings references

* clean tests without any embeddings references

* remove code

* feedback implemented

* changes in logic

* feedback implemented

* store in table bug fixed

* smoke test for generate_text_embeddings workflow

* smoke test fix

* add generate_text_embeddings to the list of transient workflows

* smoke tests

* fix

* ruff formatting updates

* fix

* smoke test fixed

* smoke test fixed

* fix lancedb import

* smoke test fix

* ignore sorting

* smoke test fixed

* smoke test fixed

* check smoke test

* smoke test fixed

* change config for vector store

* format fix

* vector store changes

* revert debug profile back to empty filepath

* merge conflict solved

* merge conflict solved

* format fixed

* format fixed

* fix return dataframe

* snapshot fix

* format fix

* embeddings param implemented

* validation fixes

* fix map

* fix map

* fix properties

* config updates

* smoke test fixed

* settings change

* Update collection config and rework back-compat

* Repalce . with - for embedding store

---------

Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
Co-authored-by: Josh Bradley <joshbradley@microsoft.com>
Co-authored-by: Nathan Evans <github@talkswithnumbers.com>
2024-11-01 15:01:35 -07:00
Nathan Evans
ce5b1207e0
Collapse graph documents workflows (#1284)
* Copy base documents logic into final documents

* Delete create_base_documents

* Combine graph creation under create_base_entity_graph

* Delete collapsed workflows

* Migrate most graph internals to nx.Graph

* Fix None edge case

* Semver

* Remove comment typo

* Fix smoke tests
2024-10-15 13:58:58 -06:00
Nathan Evans
f5c5876dde
Reorganize flows (#1240)
* Extract base docs and entity graph

* Move extracted entities and text units

* Move communities and community reports

* Move covariates and final documents

* Move entities, nodes, relationships

* Move text_units and summarized entities

* Assert all snapshot null cases

* Remove disabled steps util

* Remove incorrect use of input "others"

* Convert text_embed_df to just return the embeddings, not update the df

* Convert snapshot functions to noops

* Semver

* Remove lingering covariates_enabled param

* Name consistency

* Syntax cleanup
2024-10-02 08:57:08 -07:00
Nathan Evans
ce71bcf7fb
Collapse create final entities (#1220)
* Collapse create_final_entities

* Update smoke tests

* Semver

* Remove prints

* Update embedding assertions
2024-09-25 17:35:44 -07:00
Nathan Evans
14750f4d37
Collapse create final documents (#1217)
* Collapse create_final_documents

* Semver
2024-09-25 15:50:46 -07:00