* Move covariate run conditional
* All pipeline registration
* Fix method name construction
* Rename context storage -> output_storage
* Rename OutputConfig as generic StorageConfig
* Reuse Storage model under InputConfig
* Move input storage creation out of document loading
* Move document loading into workflows
* Semver
* Fix smoke test config for new workflows
* Fix unit tests
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Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
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