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* Move covariate run conditional * All pipeline registration * Fix method name construction * Rename context storage -> output_storage * Rename OutputConfig as generic StorageConfig * Reuse Storage model under InputConfig * Move input storage creation out of document loading * Move document loading into workflows * Semver * Fix smoke test config for new workflows * Fix unit tests --------- Co-authored-by: Alonso Guevara <alonsog@microsoft.com>