haystack/test/modeling/test_processor_save_load.py

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import logging
from pathlib import Path
feat: `MultiModalRetriever` (#2891) * Adding Data2VecVision and Data2VecText to the supported models and adapt Tokenizers accordingly * content_types * Splitting classes into respective folders * small changes * Fix EOF * eof * black * API * EOF * whitespace * api * improve multimodal similarity processor * tokenizer -> feature extractor * Making feature vectors come out of the feature extractor in the similarity head * embed_queries is now self-sufficient * couple trivial errors * Implemented separate language model classes for multimodal inference * Document embedding seems to work * removing batch_encode_plus, is deprecated anyway * Realized the base Data2Vec models are not trained on retrieval tasks * Issue with the generated embeddings * Add batching * Try to fit CLIP in * Stub of CLIP integration * Retrieval goes through but returns noise only * Still working on the scores * Introduce temporary adapter for CLIP models * Image retrieval now works with sentence-transformers * Tidying up the code * Refactoring is now functional * Add MPNet to the supported sentence transformers models * Remove unused classes * pylint * docs * docs * Remove the method renaming * mpyp first pass * docs * tutorial * schema * mypy * Move devices setup into get_model * more mypy * mypy * pylint * Move a few params in HaystackModel's init * make feature extractor work with squadprocessor * fix feature_extractor_kwargs forwarding * Forgotten part of the fix * Revert unrelated ES change * Revert unrelated memdocstore changes * comment * Small corrections * mypy and pylint * mypy * typo * mypy * Refactor the call * mypy * Do not make FARMReader use the new FeatureExtractor * mypy * Detach DPR tests from FeatureExtractor too * Detach processor tests too * Add end2end marker * extract end2end feature extractor tests * temporary disable feature extraction tests * Introduce end2end tests for tokenizer tests * pylint * Fix model loading from folder in FeatureExtractor * working o n end2end * end2end keeps failing * Restructuring retriever tests * Restructuring retriever tests * remove covert_dataset_to_dataloader * remove comment * Better check sentence-transformers models * Use embed_meta_fields properly * rename passage into document * Embedding dims can't be found * Add check for models that support it * pylint * Split all retriever tests into suites, running mostly on InMemory only * fix mypy * fix tfidf test * fix weaviate tests * Parallelize on every docstore * Fix schema and specify modality in base retriever suite * tests * Add first image tests * remove comment * Revert to simpler tests * Update docs/_src/api/api/primitives.md Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/__init__.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * get_args * mypy * Update haystack/modeling/model/multimodal/__init__.py * Update haystack/modeling/model/multimodal/base.py * Update haystack/modeling/model/multimodal/base.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/sentence_transformers.py * Update haystack/modeling/model/multimodal/sentence_transformers.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/transformers.py * Update haystack/modeling/model/multimodal/transformers.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/transformers.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/nodes/retriever/multimodal/retriever.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * mypy * mypy * removing more ContentTypes * more contentypes * pylint * add to __init__ * revert end2end workflow for now * missing integration markers * Update haystack/nodes/retriever/multimodal/embedder.py Co-authored-by: bogdankostic <bogdankostic@web.de> * review feedback, removing HaystackImageTransformerModel * review feedback part 2 * mypy & pylint * mypy * mypy * fix multimodal docs also for Pinecone * add note on internal constants * Fix pinecone write_documents * schemas * keep support for sentence-transformers only * fix pinecone test * schemas * fix pinecone again * temporarily disable some tests, need to understand if they're still relevant Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> Co-authored-by: bogdankostic <bogdankostic@web.de>
2022-10-17 18:58:35 +02:00
from transformers import AutoTokenizer
from haystack.modeling.data_handler.processor import SquadProcessor
from haystack.modeling.utils import set_all_seeds
import torch
def test_processor_saving_loading(tmp_path, caplog, samples_path):
if caplog is not None:
caplog.set_level(logging.CRITICAL)
set_all_seeds(seed=42)
lang_model = "roberta-base"
feat: `MultiModalRetriever` (#2891) * Adding Data2VecVision and Data2VecText to the supported models and adapt Tokenizers accordingly * content_types * Splitting classes into respective folders * small changes * Fix EOF * eof * black * API * EOF * whitespace * api * improve multimodal similarity processor * tokenizer -> feature extractor * Making feature vectors come out of the feature extractor in the similarity head * embed_queries is now self-sufficient * couple trivial errors * Implemented separate language model classes for multimodal inference * Document embedding seems to work * removing batch_encode_plus, is deprecated anyway * Realized the base Data2Vec models are not trained on retrieval tasks * Issue with the generated embeddings * Add batching * Try to fit CLIP in * Stub of CLIP integration * Retrieval goes through but returns noise only * Still working on the scores * Introduce temporary adapter for CLIP models * Image retrieval now works with sentence-transformers * Tidying up the code * Refactoring is now functional * Add MPNet to the supported sentence transformers models * Remove unused classes * pylint * docs * docs * Remove the method renaming * mpyp first pass * docs * tutorial * schema * mypy * Move devices setup into get_model * more mypy * mypy * pylint * Move a few params in HaystackModel's init * make feature extractor work with squadprocessor * fix feature_extractor_kwargs forwarding * Forgotten part of the fix * Revert unrelated ES change * Revert unrelated memdocstore changes * comment * Small corrections * mypy and pylint * mypy * typo * mypy * Refactor the call * mypy * Do not make FARMReader use the new FeatureExtractor * mypy * Detach DPR tests from FeatureExtractor too * Detach processor tests too * Add end2end marker * extract end2end feature extractor tests * temporary disable feature extraction tests * Introduce end2end tests for tokenizer tests * pylint * Fix model loading from folder in FeatureExtractor * working o n end2end * end2end keeps failing * Restructuring retriever tests * Restructuring retriever tests * remove covert_dataset_to_dataloader * remove comment * Better check sentence-transformers models * Use embed_meta_fields properly * rename passage into document * Embedding dims can't be found * Add check for models that support it * pylint * Split all retriever tests into suites, running mostly on InMemory only * fix mypy * fix tfidf test * fix weaviate tests * Parallelize on every docstore * Fix schema and specify modality in base retriever suite * tests * Add first image tests * remove comment * Revert to simpler tests * Update docs/_src/api/api/primitives.md Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/__init__.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * get_args * mypy * Update haystack/modeling/model/multimodal/__init__.py * Update haystack/modeling/model/multimodal/base.py * Update haystack/modeling/model/multimodal/base.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/sentence_transformers.py * Update haystack/modeling/model/multimodal/sentence_transformers.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/transformers.py * Update haystack/modeling/model/multimodal/transformers.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/modeling/model/multimodal/transformers.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * Update haystack/nodes/retriever/multimodal/retriever.py Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> * mypy * mypy * removing more ContentTypes * more contentypes * pylint * add to __init__ * revert end2end workflow for now * missing integration markers * Update haystack/nodes/retriever/multimodal/embedder.py Co-authored-by: bogdankostic <bogdankostic@web.de> * review feedback, removing HaystackImageTransformerModel * review feedback part 2 * mypy & pylint * mypy * mypy * fix multimodal docs also for Pinecone * add note on internal constants * Fix pinecone write_documents * schemas * keep support for sentence-transformers only * fix pinecone test * schemas * fix pinecone again * temporarily disable some tests, need to understand if they're still relevant Co-authored-by: Agnieszka Marzec <97166305+agnieszka-m@users.noreply.github.com> Co-authored-by: bogdankostic <bogdankostic@web.de>
2022-10-17 18:58:35 +02:00
tokenizer = AutoTokenizer.from_pretrained(pretrained_model_name_or_path=lang_model, do_lower_case=False)
processor = SquadProcessor(
tokenizer=tokenizer,
max_seq_len=256,
label_list=["start_token", "end_token"],
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train_filename="train-sample.json",
dev_filename="dev-sample.json",
test_filename=None,
data_dir=samples_path / "qa",
)
dicts = processor.file_to_dicts(file=samples_path / "qa" / "dev-sample.json")
data, tensor_names, _ = processor.dataset_from_dicts(dicts=dicts, indices=[1])
Pipeline's YAML: syntax validation (#2226) * Add BasePipeline.validate_config, BasePipeline.validate_yaml, and some new custom exception classes * Make error composition work properly * Clarify typing * Help mypy a bit more * Update Documentation & Code Style * Enable autogenerated docs for Milvus1 and 2 separately * Revert "Enable autogenerated docs for Milvus1 and 2 separately" This reverts commit 282be4a78a6e95862a9b4c924fc3dea5ca71e28d. * Update Documentation & Code Style * Re-enable 'additionalProperties: False' * Add pipeline.type to JSON Schema, was somehow forgotten * Disable additionalProperties on the pipeline properties too * Fix json-schemas for 1.1.0 and 1.2.0 (should not do it again in the future) * Cal super in PipelineValidationError * Improve _read_pipeline_config_from_yaml's error handling * Fix generate_json_schema.py to include document stores * Fix json schemas (retro-fix 1.1.0 again) * Improve custom errors printing, add link to docs * Add function in BaseComponent to list its subclasses in a module * Make some document stores base classes abstract * Add marker 'integration' in pytest flags * Slighly improve validation of pipelines at load * Adding tests for YAML loading and validation * Make custom_query Optional for validation issues * Fix bug in _read_pipeline_config_from_yaml * Improve error handling in BasePipeline and Pipeline and add DAG check * Move json schema generation into haystack/nodes/_json_schema.py (useful for tests) * Simplify errors slightly * Add some YAML validation tests * Remove load_from_config from BasePipeline, it was never used anyway * Improve tests * Include json-schemas in package * Fix conftest imports * Make BasePipeline abstract * Improve mocking by making the test independent from the YAML version * Add exportable_to_yaml decorator to forget about set_config on mock nodes * Fix mypy errors * Comment out one monkeypatch * Fix typing again * Improve error message for validation * Add required properties to pipelines * Fix YAML version for REST API YAMLs to 1.2.0 * Fix load_from_yaml call in load_from_deepset_cloud * fix HaystackError.__getattr__ * Add super().__init__()in most nodes and docstore, comment set_config * Remove type from REST API pipelines * Remove useless init from doc2answers * Call super in Seq3SeqGenerator * Typo in deepsetcloud.py * Fix rest api indexing error mismatch and mock version of JSON schema in all tests * Working on pipeline tests * Improve errors printing slightly * Add back test_pipeline.yaml * _json_schema.py supports different versions with identical schemas * Add type to 0.7 schema for backwards compatibility * Fix small bug in _json_schema.py * Try alternative to generate json schemas on the CI * Update Documentation & Code Style * Make linux CI match autoformat CI * Fix super-init-not-called * Accidentally committed file * Update Documentation & Code Style * fix test_summarizer_translation.py's import * Mock YAML in a few suites, split and simplify test_pipeline_debug_and_validation.py::test_invalid_run_args * Fix json schema for ray tests too * Update Documentation & Code Style * Reintroduce validation * Usa unstable version in tests and rest api * Make unstable support the latest versions * Update Documentation & Code Style * Remove needless fixture * Make type in pipeline optional in the strings validation * Fix schemas * Fix string validation for pipeline type * Improve validate_config_strings * Remove type from test p[ipelines * Update Documentation & Code Style * Fix test_pipeline * Removing more type from pipelines * Temporary CI patc * Fix issue with exportable_to_yaml never invoking the wrapped init * rm stray file * pipeline tests are green again * Linux CI now needs .[all] to generate the schema * Bugfixes, pipeline tests seems to be green * Typo in version after merge * Implement missing methods in Weaviate * Trying to avoid FAISS tests from running in the Milvus1 test suite * Fix some stray test paths and faiss index dumping * Fix pytest markers list * Temporarily disable cache to be able to see tests failures * Fix pyproject.toml syntax * Use only tmp_path * Fix preprocessor signature after merge * Fix faiss bug * Fix Ray test * Fix documentation issue by removing quotes from faiss type * Update Documentation & Code Style * use document properly in preprocessor tests * Update Documentation & Code Style * make preprocessor capable of handling documents * import document * Revert support for documents in preprocessor, do later * Fix bug in _json_schema.py that was breaking validation * re-enable cache * Update Documentation & Code Style * Simplify calling _json_schema.py from the CI * Remove redundant ABC inheritance * Ensure exportable_to_yaml works only on implementations * Rename subclass to class_ in Meta * Make run() and get_config() abstract in BasePipeline * Revert unintended change in preprocessor * Move outgoing_edges_input_node check inside try block * Rename VALID_CODE_GEN_INPUT_REGEX into VALID_INPUT_REGEX * Add check for a RecursionError on validate_config_strings * Address usages of _pipeline_config in data silo and elasticsearch * Rename _pipeline_config into _init_parameters * Fix pytest marker and remove unused imports * Remove most redundant ABCs * Rename _init_parameters into _component_configuration * Remove set_config and type from _component_configuration's dict * Remove last instances of set_config and replace with super().__init__() * Implement __init_subclass__ approach * Simplify checks on the existence of _component_configuration * Fix faiss issue * Dynamic generation of node schemas & weed out old schemas * Add debatable test * Add docstring to debatable test * Positive diff between schemas implemented * Improve diff printing * Rename REST API YAML files to trigger IDE validation * Fix typing issues * Fix more typing * Typo in YAML filename * Remove needless type:ignore * Add tests * Fix tests & validation feedback for accessory classes in custom nodes * Refactor RAGeneratorType out * Fix broken import in conftest * Improve source error handling * Remove unused import in test_eval.py breaking tests * Fix changed error message in tests matches too * Normalize generate_openapi_specs.py and generate_json_schema.py in the actions * Fix path to generate_openapi_specs.py in autoformat.yml * Update Documentation & Code Style * Add test for FAISSDocumentStore-like situations (superclass with init params) * Update Documentation & Code Style * Fix indentation * Remove commented set_config * Store model_name_or_path in FARMReader to use in DistillationDataSilo * Rename _component_configuration into _component_config * Update Documentation & Code Style Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2022-03-15 11:17:26 +01:00
save_dir = tmp_path / Path("testsave/processor")
processor.save(save_dir)
processor = processor.load_from_dir(save_dir)
dicts = processor.file_to_dicts(file=samples_path / "qa" / "dev-sample.json")
data_loaded, tensor_names_loaded, _ = processor.dataset_from_dicts(dicts, indices=[1])
assert tensor_names == tensor_names_loaded
for i in range(len(data.tensors)):
assert torch.all(torch.eq(data.tensors[i], data_loaded.tensors[i]))
if __name__ == "__main__":
test_processor_saving_loading(None)