feat: Add CohereEmbeddingEncoder to EmbeddingRetriever (#3453)

.github/workflows/tests.yml

@@ -25,6 +25,7 @@ env:
     --ignore=test/nodes/test_summarizer_translation.py
     --ignore=test/nodes/test_summarizer.py
   OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  COHERE_API_KEY: ${{ secrets.COHERE_API_KEY }}
 
 jobs:
 

haystack/errors.py

@@ -128,3 +128,11 @@ class OpenAIRateLimitError(OpenAIError):
 
     def __init__(self, message: Optional[str] = None):
         super().__init__(message=message, status_code=429)
+
+
+class CohereError(NodeError):
+    """Exception for issues that occur in the Cohere APIs"""
+
+    def __init__(self, message: Optional[str] = None, status_code: Optional[int] = None):
+        super().__init__(message=message)
+        self.status_code = status_code

haystack/nodes/retriever/_embedding_encoder.py

@@ -13,7 +13,7 @@ from torch.utils.data.sampler import SequentialSampler
 from tqdm.auto import tqdm
 from transformers import AutoModel, AutoTokenizer
 
-from haystack.errors import OpenAIError, OpenAIRateLimitError
+from haystack.errors import OpenAIError, OpenAIRateLimitError, CohereError
 from haystack.modeling.data_handler.dataloader import NamedDataLoader
 from haystack.modeling.data_handler.dataset import convert_features_to_dataset, flatten_rename
 from haystack.modeling.infer import Inferencer
@@ -386,11 +386,12 @@ class _RetribertEmbeddingEncoder(_BaseEmbeddingEncoder):
 
 class _OpenAIEmbeddingEncoder(_BaseEmbeddingEncoder):
     def __init__(self, retriever: "EmbeddingRetriever"):
-        # pretrained embedding models coming from:
+        # See https://beta.openai.com/docs/guides/embeddings for more details
-        self.max_seq_len = retriever.max_seq_len
+        # OpenAI has a max seq length of 2048 tokens and unknown max batch size
+        self.max_seq_len = min(2048, retriever.max_seq_len)
         self.url = "https://api.openai.com/v1/embeddings"
         self.api_key = retriever.api_key
-        self.batch_size = retriever.batch_size
+        self.batch_size = min(64, retriever.batch_size)
         self.progress_bar = retriever.progress_bar
         model_class: str = next(
             (m for m in ["ada", "babbage", "davinci", "curie"] if m in retriever.embedding_model), "babbage"
@@ -463,10 +464,73 @@ class _OpenAIEmbeddingEncoder(_BaseEmbeddingEncoder):
         raise NotImplementedError(f"Saving is not implemented for {self.__class__}")
 
 
+class _CohereEmbeddingEncoder(_BaseEmbeddingEncoder):
+    def __init__(self, retriever: "EmbeddingRetriever"):
+        # See https://docs.cohere.ai/embed-reference/ for more details
+        # Cohere has a max seq length of 4096 tokens and a max batch size of 16
+        self.max_seq_len = min(4096, retriever.max_seq_len)
+        self.url = "https://api.cohere.ai/embed"
+        self.api_key = retriever.api_key
+        self.batch_size = min(16, retriever.batch_size)
+        self.progress_bar = retriever.progress_bar
+        self.model: str = next((m for m in ["small", "medium", "large"] if m in retriever.embedding_model), "large")
+        self.tokenizer = AutoTokenizer.from_pretrained("gpt2")
+
+    def _ensure_text_limit(self, text: str) -> str:
+        """
+        Ensure that length of the text is within the maximum length of the model.
+        Cohere embedding models have a limit of 4096 tokens
+        """
+        tokenized_payload = self.tokenizer(text)
+        return self.tokenizer.decode(tokenized_payload["input_ids"][: self.max_seq_len])
+
+    @retry_with_exponential_backoff(backoff_in_seconds=10, max_retries=5, errors=(CohereError,))
+    def embed(self, model: str, text: List[str]) -> np.ndarray:
+        payload = {"model": model, "texts": text}
+        headers = {"Authorization": f"BEARER {self.api_key}", "Content-Type": "application/json"}
+        response = requests.request("POST", self.url, headers=headers, data=json.dumps(payload), timeout=30)
+        res = json.loads(response.text)
+        if response.status_code != 200:
+            raise CohereError(response.text, status_code=response.status_code)
+        generated_embeddings = [e for e in res["embeddings"]]
+        return np.array(generated_embeddings)
+
+    def embed_batch(self, text: List[str]) -> np.ndarray:
+        all_embeddings = []
+        for i in tqdm(
+            range(0, len(text), self.batch_size), disable=not self.progress_bar, desc="Calculating embeddings"
+        ):
+            batch = text[i : i + self.batch_size]
+            batch_limited = [self._ensure_text_limit(content) for content in batch]
+            generated_embeddings = self.embed(self.model, batch_limited)
+            all_embeddings.append(generated_embeddings)
+        return np.concatenate(all_embeddings)
+
+    def embed_queries(self, queries: List[str]) -> np.ndarray:
+        return self.embed_batch(queries)
+
+    def embed_documents(self, docs: List[Document]) -> np.ndarray:
+        return self.embed_batch([d.content for d in docs])
+
+    def train(
+        self,
+        training_data: List[Dict[str, Any]],
+        learning_rate: float = 2e-5,
+        n_epochs: int = 1,
+        num_warmup_steps: int = None,
+        batch_size: int = 16,
+    ):
+        raise NotImplementedError(f"Training is not implemented for {self.__class__}")
+
+    def save(self, save_dir: Union[Path, str]):
+        raise NotImplementedError(f"Saving is not implemented for {self.__class__}")
+
+
 _EMBEDDING_ENCODERS: Dict[str, Callable] = {
     "farm": _DefaultEmbeddingEncoder,
     "transformers": _DefaultEmbeddingEncoder,
     "sentence_transformers": _SentenceTransformersEmbeddingEncoder,
     "retribert": _RetribertEmbeddingEncoder,
     "openai": _OpenAIEmbeddingEncoder,
+    "cohere": _CohereEmbeddingEncoder,
 }

haystack/nodes/retriever/dense.py

@@ -1499,7 +1499,10 @@ class EmbeddingRetriever(DenseRetriever):
     ):
         """
         :param document_store: An instance of DocumentStore from which to retrieve documents.
-        :param embedding_model: Local path or name of model in Hugging Face's model hub such as ``'sentence-transformers/all-MiniLM-L6-v2'``
+        :param embedding_model: Local path or name of model in Hugging Face's model hub such
+                                as ``'sentence-transformers/all-MiniLM-L6-v2'``. The embedding model could also
+                                potentially be an OpenAI model ["ada", "babbage", "davinci", "curie"] or
+                                a Cohere model ["small", "medium", "large"].
         :param model_version: The version of model to use from the HuggingFace model hub. Can be tag name, branch name, or commit hash.
         :param use_gpu: Whether to use all available GPUs or the CPU. Falls back on CPU if no GPU is available.
         :param batch_size: Number of documents to encode at once.
@@ -1513,6 +1516,7 @@ class EmbeddingRetriever(DenseRetriever):
                              - ``'sentence_transformers'`` (will use `_SentenceTransformersEmbeddingEncoder` as embedding encoder)
                              - ``'retribert'`` (will use `_RetribertEmbeddingEncoder` as embedding encoder)
                              - ``'openai'``: (will use `_OpenAIEmbeddingEncoder` as embedding encoder)
+                             - ``'cohere'``: (will use `_CohereEmbeddingEncoder` as embedding encoder)
         :param pooling_strategy: Strategy for combining the embeddings from the model (for farm / transformers models only).
                                  Options:
 
@@ -1543,8 +1547,8 @@ class EmbeddingRetriever(DenseRetriever):
                                   This approach is also used in the TableTextRetriever paper and is likely to improve
                                   performance if your titles contain meaningful information for retrieval
                                   (topic, entities etc.).
-        :param api_key: The OpenAI API key. Required if one wants to use OpenAI embeddings. For more
+        :param api_key: The OpenAI API key or the Cohere API key. Required if one wants to use OpenAI/Cohere embeddings.
-                        details see https://beta.openai.com/account/api-keys
+                        For more details see https://beta.openai.com/account/api-keys and https://dashboard.cohere.ai/api-keys
 
         """
         super().__init__()
@@ -1877,6 +1881,8 @@ class EmbeddingRetriever(DenseRetriever):
     def _infer_model_format(model_name_or_path: str, use_auth_token: Optional[Union[str, bool]]) -> str:
         if any(m in model_name_or_path for m in ["ada", "babbage", "davinci", "curie"]):
             return "openai"
+        if model_name_or_path in ["small", "medium", "large"]:
+            return "cohere"
         # Check if model name is a local directory with sentence transformers config file in it
         if Path(model_name_or_path).exists():
             if Path(f"{model_name_or_path}/config_sentence_transformers.json").exists():

test/conftest.py

@@ -825,6 +825,13 @@ def get_retriever(retriever_type, document_store):
             use_gpu=False,
             api_key=os.environ.get("OPENAI_API_KEY", ""),
         )
+    elif retriever_type == "cohere":
+        retriever = EmbeddingRetriever(
+            document_store=document_store,
+            embedding_model="small",
+            use_gpu=False,
+            api_key=os.environ.get("COHERE_API_KEY", ""),
+        )
     elif retriever_type == "dpr_lfqa":
         retriever = DensePassageRetriever(
             document_store=document_store,

test/nodes/test_retriever.py

@@ -266,13 +266,14 @@ def test_retribert_embedding(document_store, retriever, docs_with_ids):
 
 @pytest.mark.integration
 @pytest.mark.parametrize("document_store", ["memory"], indirect=True)
-@pytest.mark.parametrize("retriever", ["openai"], indirect=True)
+@pytest.mark.parametrize("retriever", ["openai", "cohere"], indirect=True)
 @pytest.mark.embedding_dim(1024)
 @pytest.mark.skipif(
-    not os.environ.get("OPENAI_API_KEY", None),
+    not os.environ.get("OPENAI_API_KEY", None) and not os.environ.get("COHERE_API_KEY", None),
-    reason="Please export an env var called OPENAI_API_KEY containing the OpenAI API key to run this test.",
+    reason="Please export an env var called OPENAI_API_KEY/COHERE_API_KEY containing "
+    "the OpenAI/Cohere API key to run this test.",
 )
-def test_openai_embedding(document_store, retriever, docs_with_ids):
+def test_basic_embedding(document_store, retriever, docs_with_ids):
     document_store.return_embedding = True
     document_store.write_documents(docs_with_ids)
     document_store.update_embeddings(retriever=retriever)
@@ -286,11 +287,12 @@ def test_openai_embedding(document_store, retriever, docs_with_ids):
 
 @pytest.mark.integration
 @pytest.mark.parametrize("document_store", ["memory"], indirect=True)
-@pytest.mark.parametrize("retriever", ["openai"], indirect=True)
+@pytest.mark.parametrize("retriever", ["openai", "cohere"], indirect=True)
 @pytest.mark.embedding_dim(1024)
 @pytest.mark.skipif(
-    not os.environ.get("OPENAI_API_KEY", None),
+    not os.environ.get("OPENAI_API_KEY", None) and not os.environ.get("COHERE_API_KEY", None),
-    reason="Please export an env var called OPENAI_API_KEY containing the OpenAI API key to run this test.",
+    reason="Please export an env var called OPENAI_API_KEY/COHERE_API_KEY containing "
+    "the OpenAI/Cohere API key to run this test.",
 )
 def test_retriever_basic_search(document_store, retriever, docs_with_ids):
     document_store.return_embedding = True