* Add BasePipeline.validate_config, BasePipeline.validate_yaml, and some new custom exception classes
* Make error composition work properly
* Clarify typing
* Help mypy a bit more
* Update Documentation & Code Style
* Enable autogenerated docs for Milvus1 and 2 separately
* Revert "Enable autogenerated docs for Milvus1 and 2 separately"
This reverts commit 282be4a78a6e95862a9b4c924fc3dea5ca71e28d.
* Update Documentation & Code Style
* Re-enable 'additionalProperties: False'
* Add pipeline.type to JSON Schema, was somehow forgotten
* Disable additionalProperties on the pipeline properties too
* Fix json-schemas for 1.1.0 and 1.2.0 (should not do it again in the future)
* Cal super in PipelineValidationError
* Improve _read_pipeline_config_from_yaml's error handling
* Fix generate_json_schema.py to include document stores
* Fix json schemas (retro-fix 1.1.0 again)
* Improve custom errors printing, add link to docs
* Add function in BaseComponent to list its subclasses in a module
* Make some document stores base classes abstract
* Add marker 'integration' in pytest flags
* Slighly improve validation of pipelines at load
* Adding tests for YAML loading and validation
* Make custom_query Optional for validation issues
* Fix bug in _read_pipeline_config_from_yaml
* Improve error handling in BasePipeline and Pipeline and add DAG check
* Move json schema generation into haystack/nodes/_json_schema.py (useful for tests)
* Simplify errors slightly
* Add some YAML validation tests
* Remove load_from_config from BasePipeline, it was never used anyway
* Improve tests
* Include json-schemas in package
* Fix conftest imports
* Make BasePipeline abstract
* Improve mocking by making the test independent from the YAML version
* Add exportable_to_yaml decorator to forget about set_config on mock nodes
* Fix mypy errors
* Comment out one monkeypatch
* Fix typing again
* Improve error message for validation
* Add required properties to pipelines
* Fix YAML version for REST API YAMLs to 1.2.0
* Fix load_from_yaml call in load_from_deepset_cloud
* fix HaystackError.__getattr__
* Add super().__init__()in most nodes and docstore, comment set_config
* Remove type from REST API pipelines
* Remove useless init from doc2answers
* Call super in Seq3SeqGenerator
* Typo in deepsetcloud.py
* Fix rest api indexing error mismatch and mock version of JSON schema in all tests
* Working on pipeline tests
* Improve errors printing slightly
* Add back test_pipeline.yaml
* _json_schema.py supports different versions with identical schemas
* Add type to 0.7 schema for backwards compatibility
* Fix small bug in _json_schema.py
* Try alternative to generate json schemas on the CI
* Update Documentation & Code Style
* Make linux CI match autoformat CI
* Fix super-init-not-called
* Accidentally committed file
* Update Documentation & Code Style
* fix test_summarizer_translation.py's import
* Mock YAML in a few suites, split and simplify test_pipeline_debug_and_validation.py::test_invalid_run_args
* Fix json schema for ray tests too
* Update Documentation & Code Style
* Reintroduce validation
* Usa unstable version in tests and rest api
* Make unstable support the latest versions
* Update Documentation & Code Style
* Remove needless fixture
* Make type in pipeline optional in the strings validation
* Fix schemas
* Fix string validation for pipeline type
* Improve validate_config_strings
* Remove type from test p[ipelines
* Update Documentation & Code Style
* Fix test_pipeline
* Removing more type from pipelines
* Temporary CI patc
* Fix issue with exportable_to_yaml never invoking the wrapped init
* rm stray file
* pipeline tests are green again
* Linux CI now needs .[all] to generate the schema
* Bugfixes, pipeline tests seems to be green
* Typo in version after merge
* Implement missing methods in Weaviate
* Trying to avoid FAISS tests from running in the Milvus1 test suite
* Fix some stray test paths and faiss index dumping
* Fix pytest markers list
* Temporarily disable cache to be able to see tests failures
* Fix pyproject.toml syntax
* Use only tmp_path
* Fix preprocessor signature after merge
* Fix faiss bug
* Fix Ray test
* Fix documentation issue by removing quotes from faiss type
* Update Documentation & Code Style
* use document properly in preprocessor tests
* Update Documentation & Code Style
* make preprocessor capable of handling documents
* import document
* Revert support for documents in preprocessor, do later
* Fix bug in _json_schema.py that was breaking validation
* re-enable cache
* Update Documentation & Code Style
* Simplify calling _json_schema.py from the CI
* Remove redundant ABC inheritance
* Ensure exportable_to_yaml works only on implementations
* Rename subclass to class_ in Meta
* Make run() and get_config() abstract in BasePipeline
* Revert unintended change in preprocessor
* Move outgoing_edges_input_node check inside try block
* Rename VALID_CODE_GEN_INPUT_REGEX into VALID_INPUT_REGEX
* Add check for a RecursionError on validate_config_strings
* Address usages of _pipeline_config in data silo and elasticsearch
* Rename _pipeline_config into _init_parameters
* Fix pytest marker and remove unused imports
* Remove most redundant ABCs
* Rename _init_parameters into _component_configuration
* Remove set_config and type from _component_configuration's dict
* Remove last instances of set_config and replace with super().__init__()
* Implement __init_subclass__ approach
* Simplify checks on the existence of _component_configuration
* Fix faiss issue
* Dynamic generation of node schemas & weed out old schemas
* Add debatable test
* Add docstring to debatable test
* Positive diff between schemas implemented
* Improve diff printing
* Rename REST API YAML files to trigger IDE validation
* Fix typing issues
* Fix more typing
* Typo in YAML filename
* Remove needless type:ignore
* Add tests
* Fix tests & validation feedback for accessory classes in custom nodes
* Refactor RAGeneratorType out
* Fix broken import in conftest
* Improve source error handling
* Remove unused import in test_eval.py breaking tests
* Fix changed error message in tests matches too
* Normalize generate_openapi_specs.py and generate_json_schema.py in the actions
* Fix path to generate_openapi_specs.py in autoformat.yml
* Update Documentation & Code Style
* Add test for FAISSDocumentStore-like situations (superclass with init params)
* Update Documentation & Code Style
* Fix indentation
* Remove commented set_config
* Store model_name_or_path in FARMReader to use in DistillationDataSilo
* Rename _component_configuration into _component_config
* Update Documentation & Code Style
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* update remaining occurences of get_connection
* fix milvus2 import and fix wrong extra references
* change MilvusDocumentStore to Milvus1DocumentStore
* update milvus docstrings to reflect updated dependency management
* enable milvus 2 tests
* fix milvus2 env variable processing
* fix dropping collections for each milvus 2 test
* make Milvus 2 doc store tests work
* allow user to specify consistency level
* Fist attempt at running Milvus2 in the CI
* Install the correct pymilvus
* add batch deletion for milvus2
* change default from milvus 1 to milvus 2
* make milvus2 the default in the docstores extra
* Switch milvus1 and milvus2 in base test run on CI
* Rename docstore flags for pytest: 'milvus'->'milvus1', 'milvus2'->'milvus'
* Rename milvus.py->milvus1.py and milvus2x.py->milvus2.py
* Enable autogenerated docs for Milvus1 and 2 separately
* Partial fix to docstring of Milvus2DocumentStore
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Michel Bartels <kontakt@michelbartels.com>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* Trigger generation of the json schema for 1.2.0
* Remove path filters for `autoformat.yml`
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Remove invalid-envvar-default and logging-too-many-args
* Remove import-self, access-member-before-definition and deprecated-argument
* Remove used-before-assignment by restructuring type import
* Remove unneeded-not
* Silence unnecessary-lambda (it's necessary)
* Remove pointless-string-statement
* Update Documentation & Code Style
* Silenced unsupported-membership-test (probably a real bug, can't fix though)
* Remove trailing-newlines
* Remove super-init-not-called and slience invalid-sequence-index (it's valid)
* Remove invalid-envvar-default in ui
* Remove some more warnings from pyproject.toml than actually solrted in code, CI will fail
* Linting all modules together is more readable
* Update Documentation & Code Style
* Typo in pylint disable comment
* Simplify long boolean statement
* Simplify init call in FAISS
* Fix inconsistent-return-statements
* Fix useless-super-delegation
* Fix useless-else-on-loop
* Fix another inconsistent-return-statements
* Move back pylint disable comment moved by black
* Fix consider-using-set-comprehension
* Fix another consider-using-set-comprehension
* Silence non-parent-init-called
* Update pylint exclusion list
* Update Documentation & Code Style
* Resolve unnecessary-else-after-break
* Fix superfluous-parens
* Fix no-else-break
* Remove is_correctly_retrieved along with its pylint issue
* Update exclusions list
* Silence constructor issue in squad_data.py (method is already broken)
* Fix too-many-return-statements
* Fix use-dict-literal
* Fix consider-using-from-import and useless-object-inheritance
* Update exclusion list
* Fix simplifiable-if-statements
* Fix one consider-using-dict-items
* Fix another consider-using-dict-items
* Fix a third consider-using-dict-items
* Fix last consider-using-dict-items
* Fix three use-a-generator
* Silence import errors on numba, tensorboardX and apex, but add comments & logs
* Fix couple of mypy issues
* Fix another typing issue
* Silence mypy, was conflicting with more meaningful pylint issue
* Fix no-else-continue
* Silence unsubscriptable-object and fix an import error with importlib.metadata
* Update Documentation & Code Style
* Fix all no-else-raise
* Update Documentation & Code Style
* Fix inverted parameters in simplified if switch
* Change [test] to [all] in some jobs (for typing and linting)
* Add comment in haystack/schema.py on pydantic's dataclasses
* Move comment from get_documents_by_id into _convert_weaviate_result_to_document in weaviate.py
* Add comment on pylint silencing
* Fix bug introduced rest_api/controller/search.py
* Update Documentation & Code Style
* Add ADR about Pydantic dataclasses
* Update pydantic-dataclasses.md
* Add link to Pydantic docs on Dataclasses
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Make YAML files get the same version as Haystack and throw warning at load in case of mismatch
* Update version of most YAMLs in the codebase (aesthethic chamge, only to avoid the warning).
* Remove quotes from version in tests
* Fix version in generate_json_schema.py
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Add explicit reference to repo name to allow CI to push code back
* Run test matrix only on tested code changes
* Isolate the bot to check if it works
* Clarify situation with a comment
* Simplify autoformat.yml
* Add code and docs check
* Add git pull to make sure to fetch changes if they were created
* Add cache to autoformat.yml too
* Add information on forks in CONTRIBUTING.md
* Add a not about code quality tools in CONTRIBUTING.md
* Add image file types to the CI exclusion list
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* move commandline args to global conftest
* correct test exclude paths
* Update Documentation & Code Style
* exclude test_generator_pipeline_with_translator from windows ci
* exclude further oom tests
* enable log_cli
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Make mypy check also ui and rest_api, fix ui
* Remove explicit type packages from extras, mypy now downloads them
* Make pylint and mypy run on every file except tests
* Rename tasks
* Change cache key
* Fix mypy errors in rest_api
* Normalize python versions to avoid cache misses
* Add all exclusions to make pylint pass
* Run mypy on rest_api and ui as well
* test if installing the package really changes outcome
* Comment out installation of packages
* Experiment: randomize tests
* Add fallback installation steps on cache misses
* Remove randomization
* Add comment on cache
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* Fix a path issue in Dockerfile-GPU
* Fix paths in Dockerfile-GPU
* Add workflow_dispatch to docker build task
* Remove reference to optional component from ui/, not needed anymore
* Move pytorch installation last to avoid replacing it later
* Remove optional import from rest_api too, no more needed
* Change path in ui/Dockerfile
* ui container works again
* Complete review of import paths
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Upgrade pydoc-markdown and fix the YAMLs to work with it
* Pin pydoc-markdown to major version
* Generalize pydoc-markdown workflow
* Make a single Action to perform all tasks that require committing into the local branch
* Merge the code updates and the docs in the Linux CI to prevent the bot from always show the pipeline as green
* Installing Jupyter deps for Black
* Build cache before running generation tasks
* Add check not to run the code generation on master
* Simplify push action
* Add more test deps in setup.cfg and remove from GH Action workflow
* Remove forced upgrades on pip install
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Testing black on ui/
* Applying black on docstores
* Add latest docstring and tutorial changes
* Create a single GH action for Black and docs to reduce commit noise to the minimum, slightly refactor the OpenAPI action too
* Remove comments
* Relax constraints on pydoc-markdown
* Split temporary black from the docs. Pydoc-markdown was obsolete and needs a separate PR to upgrade
* Fix a couple of bugs
* Add a type: ignore that was missing somehow
* Give path to black
* Apply Black
* Apply Black
* Relocate a couple of type: ignore
* Update documentation
* Make Linux CI run after applying Black
* Triggering Black
* Apply Black
* Remove dependency, does not work well
* Remove manually double trailing commas
* Update documentation
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* Adding simple setup.py to ui/ and rest_api and remove respective extras from main setup.cfg
* Make 'pip install rest_api/' fetch the local Haystack instead of downloading from pypi
* Add some comments to the new setup.py files and fix the Dockerfiles
* Add version info to 'farm-haystack-ui'
* Fix the OpenAPI Specs workflow
* Install rest_api and ui properly on the CI too
* Make the workflow see changes on every setup file
* Fix workflow cache keys
* Add license to rest_api and ui
* Revert "Make the docstring bot work only on master (#2078)"
This reverts commit 649d07405770cd59696d0120107a3b2f0aafe7c2.
* Add latest docstring and tutorial changes
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* 🎨 Update type annotations to allow their extraction for JSON Schema
* ✨ Add main script doing all the work to generate the JSON Schema
* ➕ Add GitHub Action dependency to generate JSON Schema
* ✨ Update JSON Schema generation script to allow easily generating the schema without making a PR
* 👷 Add GitHub Action to generate JSON Schema
* 💚 Fix CI GitHub Action
* 💚 Update GitHub Action environment variables
* ✨ Add initial JSON Schema
* Add latest docstring and tutorial changes
* 🐛 Do not allow extra params not defined in each model
* ♻️ Make any additional properties invalid
* ✨ Make other additional properties invalid in all the levels in pipelines
* ♻️ Do not include Base classes as possible nodes
* 🍱 Update JSON Schema
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Disable cache on the CI
* Reintroduce paths
* Add most files to the cache key
* remove date and path from cache key
* Try double install with cache
* Try to cache more stuff, on a per-commit basis
* Fix windows CI too
* Add comment on how to speed up the CI with better caching
* Add docstrings to the REST API endpoint to have them included in the OpenAPI specs
* Attempt at make GitHub CI generate the OpenAPI specs
* Missing __init__.py was breaking rest_api import
* Add comment on dummy pipeline
* Create separate workflow file for the OpenAPI specs generation
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Markus Paff <markuspaff.mp@gmail.com>
* Fist attempt at using setup.cfg for dependency management
* Trying the new package on the CI and in Docker too
* Add composite extras_require
* Add the safe_import function for document store imports and add some try-catch statements on rest_api and ui imports
* Fix bug on class import and rephrase error message
* Introduce typing for optional modules and add type: ignore in sparse.py
* Include importlib_metadata backport for py3.7
* Add colab group to extra_requires
* Fix pillow version
* Fix grpcio
* Separate out the crawler as another extra
* Make paths relative in rest_api and ui
* Update the test matrix in the CI
* Add try catch statements around the optional imports too to account for direct imports
* Never mix direct deps with self-references and add ES deps to the base install
* Refactor several paths in tests to make them insensitive to the execution path
* Include tstadel review and re-introduce Milvus1 in the tests suite, to fix
* Wrap pdf conversion utils into safe_import
* Update some tutorials and rever Milvus1 as default for now, see #2067
* Fix mypy config
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* Add ParsrConverter
* Fix typing error + add Parsr to Linux CI
* Fix valid_language for all converters + fix context generation for ParsrConverter
* Remove ParsrConverter test from WindowsCI
* Add latest docstring and tutorial changes
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* Rely api healthcheck on status code rather than json decoding
* Install UI dependencies on the Linux and Windows CI
Co-authored-by: Fabrice Depaulis <fabrice.depaulis@orange.com>
Co-authored-by: ZanSara <sarazanzo94@gmail.com>
* Upgrade torch to v1.10.0
* Adapt torch version for torch-scatter in TableQA tutorial
* Add latest docstring and tutorial changes
* Make torch version more flexible
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* separate testfile for summarizer with translation
* Add latest docstring and tutorial changes
* import SPLIT_DOCS from test_summarizer
* add workflow_dispatch to windows_ci
* add worflow_dispatch to linux_ci
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* create uuid and dummy embeddding in weaviate doc store
* handle and test for duplicate non-uuid-formatted ids in weaviate
* add uuid and dummy embedding to doc strings
* Add latest docstring and tutorial changes
* Upgrade weaviate
* Include weaviate in common doc store test cases
* Add latest docstring and tutorial changes
* Exclude weaviate doc store from eval tests
* Incorporate index name in uuid generation
* Ignore mypy error
* Fix typo
* Restore DOCS without uuid and embeddings generated by weaviate
* Supply docs for retriever tests as fixture
* Limit scope of fixture to function instead of session
* Add comments
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* Feat: Removing use of temp file while downloading archive from url along with adding CI for windows and mac platform
* Windows CI by default installing pytorch gpu hence updating CI to pick cpu version
* fixing mac cache build issue
* updating windows pip install command for torch
* another attempt
* updating ci
* Adding sudo
* fixing ls failure on windows
* another attempt to fix build issue
* Saving env variable of test files
* Adding debug log
* Github action differ on windows
* adding debug
* anohter attempt
* Windows have different ways to receive env
* fixing template
* minor fx
* Adding debug
* Removing use of json
* Adding back fromJson
* addin toJson
* removing print
* anohter attempt
* disabling parallel run at least for testing
* installing docker for mac runner
* correcting docker install command
* Linux dockers are not suported in windows
* Removing mac changes
* Upgrading pytorch
* using lts pytorch
* Separating win and ubuntu
* Install java 11
* enabling linux container env
* docker cli command
* docker cli command
* start elastic service
* List all service
* correcting service name
* Attempt to fix multiple test run
* convert to json
* another attempt to check
* Updating build cache step
* attempt
* Add tika
* Separating windows CI
* Changing CI name
* Skipping test which does not work in windows
* Skipping tests for windows
* create cleanup function in conftest
* adding skipif marker on tests
* Run windows PR on only push to master
* Addressing review comments
* Enabling windows ci for this PR
* Tika init is being called when importing tika function
* handling tika import issue
* handling tika import issue in test
* Fixing import issue
* removing tika fixure
* Removing fixture from tests
* Disable windows ci on pull request
* Add back extra pytorch install step
Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
