* remove not needed githab actions and reactivate docstrings and tutorial generation
* test workflow
* update pydoc version
* update python version
* update watchdog
* move to latest version pydoc-markdown
* remove version check
* Add latest docstring and tutorial changes
* remove test workflow
* test for param docstrings
* pin pydoc-markdown version
* add test workflow
* pin watchdog version
* Add latest docstring and tutorial changes
* update original workflow and delete test
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Bump Weaviate
* Bump Weaviate
* Bump Weaviate client
* Bump Weaviate
* Revert client version
There is a change in the client API that needs to be addressed before bumping its version
* Annotation Tool: data is not persisted when using local version #853
* First version of weaviate
* First version of weaviate
* First version of weaviate
* Updated comments
* Updated comments
* ran query, get and write tests
* update embeddings, dynamic schema and filters implemented
* Initial set of tests and fixes
* Tests added for update_embeddings and delete documents
* introduced duplicate documents fix
* fixed mypy errors
* Added Weaviate to requirements
* Fix the weaviate docker env variables
* Fixing test dependencies for now
* Created weaviate test marker and fixed query
* Update docstring
* Add documentation
* Bump up weaviate version
* Bump up weaviate version in documentation
* Bump up weaviate version in documentation
* Updgrade weaviate version
Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
* Add knowledge graph module
* Fix type hint
* Add graph retriver module
* Change type annotations, change return format
* Add graph retriever that executes questions as sparql queries
* Linking only those entities that are in the knowledge graph
* Added logging and using relations extracted from Knowledge graph for linking
* Preventing entity linking from linking the same token to multiple entities
* Pruning triples that have no variables for select and count queries
* Support knowledge graphs with Pipelines
* Add text2sparql
* Entity linking and relation linking consider more special cases now based on evaluation on labelled data
* Separating example code from KGQA implementation
* Add eval on combined extarctive and kg questions
* Remove references to hp-test
* Add fields sparql_query and long_answer_list to metadata
* Removing modular Question2SPARQL approach
* Removing additional classes used for modular kgqa approach
* preparing lcquad data
* change graph db
* Translating namespaces in knowledge graph queries
* Creating graphdb index and loading triples from .ttl file
* Fetching graph config files, triples and model from S3
* Fix incompatibility issues with BaseGraphRetriever and BaseComponent
* Removing unused utility functions
* Adding doc strings and tutorial header
* Adding sparqlwrapper dependency
* Moving tutorial header
* Sorting tutorials by number within name of notebook
* Add latest docstring and tutorial changes
* Creating test cases for knowledge graph
* Changing knowledge graph example to harry potter
* Add latest docstring and tutorial changes
* Adapting the tutorial notebook to harry potter example
* Add GraphDB fixture for tests
* Add latest docstring and tutorial changes
* Added GraphDB docker launch to CI
* Use correct GraphDB fixture
* Check if GraphDB instance is already running
* Renaming question/query and incorporating other feedback from Timo and Tanay
* Removed type annotation
* Add latest docstring and tutorial changes
Co-authored-by: oryx1729 <oryx1729@protonmail.com>
Co-authored-by: Timo Moeller <timo.moeller@deepset.ai>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* test pre commit hook
* test status
* test on this branch
* push generated docstrings and tutorials to branch
* fixed syntax error
* Add latest docstring and tutorial changes
* add files before commit
* catch commit error
* separate generation from deployment
* add deployment process for staging
* add current branch to payload
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* automate docstring and tutorial generation with every push to master
* test CI for current branch
* fixed yaml syntax
* add setupttools to install process
* checkout repo
* fixed command for shell script
* install wheel as it is needed for CI
* install mkdocs
* test without shell script
* use package from github actions
* test other configuration
* back to right config
* cleaning script
* Integration of SummarizationQAPipeline with Haystack.
* Moving summarizer tests because of OOM issue
* Fixing typo
* Splitting summarizer test in separate ci step
* Removing sysctl configuration as we already running elastic search in docker container
* fixing mypy issue
* update parameter names and docstrings
* update parameter names in BaseSummarizer
* rename pipeline
* change return type of summarizer from answer to document
* change scope of doc store fixture
* revert scope
* temp. disable test_faiss_index_save_and_load()
* fix mypy. change order for mypy in CI
Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
* initial test cml
* Update cml.yaml
* WIP test workflow
* switch to general ubuntu ami
* switch to general ubuntu ami
* disable gpu for tests
* rm gpu infos
* rm gpu infos
* update token env
* switch github token
* add postgres
* test db connection
* fix typo
* remove tty
* add sleep for db
* debug runner
* debug removal postgres
* debug: reset to working commit
* debug: change github token
* switch to new bot token
* debug token
* add back postgres
* adjust network runner docker
* add elastic
* fix typo
* adjust working dir
* fix benchmark execution
* enable s3 downloads
* add query benchmark. fix path
* add saving of markdown files
* cat md files. add faiss+dpr. increase n_queries
* switch to GPU instance
* switch availability zone
* switch to public aws DL ami
* increase volume size
* rm faiss. fix error logging
* save markdown files
* add reader benchmarks
* add download of squad data
* correct reader metric normalization
* fix newlines between reports
* fix max_docs for reader eval data. remove max_docs from ci run config
* fix mypy. switch workflow trigger
* try trigger for label
* try trigger for label
* change trigger syntax
* debug machine shutdown with test workflow
* add es and postgres to test workflow
* Revert "add es and postgres to test workflow"
This reverts commit 6f038d3d7f12eea924b54529e61b192858eaa9d5.
* Revert "debug machine shutdown with test workflow"
This reverts commit db70eabae8850b88e1d61fd79b04d4f49d54990a.
* fix typo in action. set benchmark config back to original
* Adding dummy generator implementation
* Adding tutorial to try the model
* Committing current non working code
* Committing current update where we need to call generate function directly and need to convert embedding to tensor way
* Addressing review comments.
* Refactoring finder, and implementing rag_generator class.
* Refined the implementation of RAGGenerator and now it is in clean shape
* Renaming RAGGenerator to RAGenerator
* Reverting change from finder.py and addressing review comments
* Remove support for RagSequenceForGeneration
* Utilizing embed_passage function from DensePassageRetriever
* Adding sample test data to verify generator output
* Updating testing script
* Updating testing script
* Fixing bug related to top_k
* Updating latest farm dependency
* Comment out farm dependency
* Reverting changes from TransformersReader
* Adding transformers dataset to compare transformers and haystack generator implementation
* Using generator_encoder instead of question_encoder to generate context_input_ids
* Adding workaround to install FARM dependency from master branch
* Removing unnecessary changes
* Fixing generator test
* Removing transformers datasets
* Fixing generator test
* Some cleanup and updating TODO comments
* Adding tutorial notebook
* Updating tutorials with comments
* Explicitly passing token model in RAG test
* Addressing review comments
* Fixing notebook
* Refactoring tests to reduce memory footprint
* Split generator tests in separate ci step and before running it reclaim memory by terminating containers
* Moving tika dependent test to separate dir
* Remove unwanted code
* Brining reader under session scope
* Farm is now session object hence restoring changes from default value
* Updating assert for pdf converter
* Dummy commit to trigger CI flow
* REducing memory footprint required for generator tests
* Fixing mypy issues
* Marking test with tika and elasticsearch markers. Reverting changes in CI and pytest splits
* reducing changes
* Fixing CI
* changing elastic search ci
* Fixing test error
* Disabling return of embedding
* Marking generator test as well
* Refactoring tutorials
* Increasing ES memory to 750M
* Trying another fix for ES CI
* Reverting CI changes
* Splitting tests in CI
* Generator and non-generator markers split
* Adding pytest.ini to add markers and enable strict-markers option
* Reducing elastic search container memory
* Simplifying generator test by using documents with embedding directly
* Bump up farm to 0.5.0
* add time and perf benchmark for es
* Add retriever benchmarking
* Add Reader benchmarking
* add nq to squad conversion
* add conversion stats
* clean benchmarks
* Add link to dataset
* Update imports
* add first support for neg psgs
* Refactor test
* set max_seq_len
* cleanup benchmark
* begin retriever speed benchmarking
* Add support for retriever query index benchmarking
* improve reader eval, retriever speed benchmarking
* improve retriever speed benchmarking
* Add retriever accuracy benchmark
* Add neg doc shuffling
* Add top_n
* 3x speedup of SQL. add postgres docker run. make shuffle neg a param. add more logging
* Add models to sweep
* add option for faiss index type
* remove unneeded line
* change faiss to faiss_flat
* begin automatic benchmark script
* remove existing postgres docker for benchmarking
* Add data processing scripts
* Remove shuffle in script bc data already shuffled
* switch hnsw setup from 256 to 128
* change es similarity to dot product by default
* Error includes stack trace
* Change ES default timeout
* remove delete_docs() from timing for indexing
* Add support for website export
* update website on push to benchmarks
* add complete benchmarks results
* new json format
* removed NaN as is not a valid json token
* fix benchmarking for faiss hnsw queries. do sql calls in update_embeddings() as batches
* update benchmarks for hnsw 128,20,80
* don't delete full index in delete_all_documents()
* update texts for charts
* update recall column for retriever
* change scale and add units to desc
* add units to legend
* add axis titles. update desc
* add html tags
Co-authored-by: deepset <deepset@Crenolape.localdomain>
Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
Co-authored-by: PiffPaffM <markuspaff.mp@gmail.com>
