* ci: add license compliance check
* ci: run check always for testing purposes
* revamp workflows
* temporary remove path directive
* triggering ci
* check rest api and ui too
* avoid cache to make sure env is clean
* add shield on readme
* ci: trigger CI to get latest scan
Co-authored-by: ZanSara <sarazanzo94@gmail.com>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* very first draft
* implement query and query_batch
* add more bm25 parameters
* add rank_bm25 dependency
* fix mypy
* remove tokenizer callable parameter
* remove unused import
* only json serializable attributes
* try to fix: pylint too-many-public-methods / R0904
* bm25 attribute always present
* convert errors into warnings to make the tutorial 1 work
* add docstrings; tests
* try to make tests run
* better docstrings; revert not running tests
* some suggestions from review
* rename elasticsearch retriever as bm25 in tests; try to test memory_bm25
* exclude tests with filters
* change elasticsearch to bm25 retriever in test_summarizer
* add tests
* try to improve tests
* better type hint
* adapt test_table_text_retriever_embedding
* handle non-textual docs
* query only textual documents
* add new marker
* start using test hierarchies
* move ES tests into their own class
* refactor test workflow
* job steps
* add more tests
* move more tests
* more tests
* test labels
* add more tests
* Update tests.yml
* Update tests.yml
* fix
* typo
* fix es image tag
* map es ports
* try
* fix
* default port
* remove opensearch from the markers sorcery
* revert
* skip new tests in old jobs
* skip opensearch_faiss
* hatch-run generates the schemas
* fix path
* keep schemas for now
* fix path
* schemas
* Do not generate rc schemas
* make the autorun hook self-destroy
* typo
* schemas
* schemas were ok
* improve logs to make generate_schema.py usable standalone too
* fix warning
* Update warning
* Update generate_schema.py
* black
* bump elastic to 7.16.2+
* decouple Elasticsearch and Opensearch
use method override instead of func variables
fix mypy
default value
fix broken tests
update schema
* relax version pin
* rename the base class
* rename module
* fix import order
* do not run the new tests in the old job
* remove outdated TODO
* refactor: improve support for dataclasses
* refactor: refactor class init
* refactor: remove unused import
* refactor: testing 3.7 diffs
* refactor: checking meta where is Optional
* refactor: reverting some changes on 3.7
* refactor: remove unused imports
* build: manual pre-commit run
* doc: run doc pre-commit manually
* refactor: post initialization hack for 3.7-3.10 compat.
TODO: investigate another method to improve 3.7 compatibility.
* doc: force pre-commit
* refactor: refactored for both Python 3.7 and 3.9
* docs: manually run pre-commit hooks
* docs: run api docs manually
* docs: fix wrong comment
* refactor: change no type-checked test code
* docs: update primitives
* docs: api documentation
* docs: api documentation
* refactor: minor test refactoring
* refactor: remova unused enumeration on test
* refactor: remove unneeded dir in gitignore
* refactor: exclude all private fields and change meta def
* refactor: add pydantic comment
* refactor : fix for mypy on Python 3.7
* refactor: revert custom init
* docs: update docs to new pydoc-markdown style
* Update test/nodes/test_generator.py
Co-authored-by: Sara Zan <sarazanzo94@gmail.com>
* enable Opensearch unit tests under Win
* move unit tests into a dedicated job
* skip audio tests on missing dependencies
* avoid failing test collection when soundfile is not available
* Update .github/workflows/tests.yml
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* add Opensearch extras
* let OpenSearchDocumentStore use opensearch-py
* Update Documentation & Code Style
* fix a bug found after adding tests
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* Unify CI tests (from #2466)
* Update Documentation & Code Style
* Change folder names
* Fix markers list
* Remove marker 'slow', replaced with 'integration'
* Soften children check
* Start ES first so it has time to boot while Python is setup
* Run the full workflow
* Try to make pip upgrade on Windows
* Set KG tests as integration
* Update Documentation & Code Style
* typo
* faster pylint
* Make Pylint use the cache
* filter diff files for pylint
* debug pylint statement
* revert pylint changes
* Remove path from asserted log (fails on Windows)
* Skip preprocessor test on Windows
* Tackling Windows specific failures
* Fix pytest command for windows suites
* Remove \ from command
* Move poppler test into integration
* Skip opensearch test on windows
* Add tolerance in reader sas score for Windows
* Another pytorch approx
* Raise time limit for unit tests :(
* Skip poppler test on Windows CI
* Specify to pull with FF only in docs check
* temporarily run the docs check immediately
* Allow merge commit for now
* Try without fetch depth
* Accelerating test
* Accelerating test
* Add repository and ref alongside fetch-depth
* Separate out code&docs check from tests
* Use setup-python cache
* Delete custom action
* Remove the pull step in the docs check, will find a way to run on bot commits
* Add requirements.txt in .github for caching
* Actually install dependencies
* Change deps group for pylint
* Unclear why the requirements.txt is still required :/
* Fix the code check python setup
* Install all deps for pylint
* Make the autoformat check depend on tests and doc updates workflows
* Try installing dependencies in another order
* Try again to install the deps
* quoting the paths
* Ad back the requirements
* Try again to install rest_api and ui
* Change deps group
* Duplicate haystack install line
* See if the cache is the problem
* Disable also in mypy, who knows
* split the install step
* Split install step everywhere
* Revert "Separate out code&docs check from tests"
This reverts commit 1cd59b15ffc5b984e1d642dcbf4c8ccc2bb6c9bd.
* Add back the action
* Proactive support for audio (see text2speech branch)
* Fix label generator tests
* Remove install of libsndfile1 on win temporarily
* exclude audio tests on win
* install ffmpeg for integration tests
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Remove BasePipeline and make a module for RayPipeline
* Can load pipelines from yaml, plenty of issues left
* Extract graph validation logic into _add_node_to_pipeline_graph & refactor load_from_config and add_node to use it
* Fix pipeline tests
* Move some tests out of test_pipeline.py and create MockDenseRetriever
* myoy and pylint (silencing too-many-public-methods)
* Fix issue found in some yaml files and in schema files
* Fix paths to YAML and fix some typos in Ray
* Fix eval tests
* Simplify MockDenseRetriever
* Fix Ray test
* Accidentally pushed merge coinflict, fixed
* Typo in schemas
* Typo in _json_schema.py
* Slightly reduce noisyness of version validation warnings
* Fix version logs tests
* Fix version logs tests again
* remove seemingly unused file
* Add check and test to avoid adding the same node to the pipeline twice
* Update Documentation & Code Style
* Revert config to pipeline_config
* Remo0ve unused import
* Complete reverting to pipeline_config
* Some more stray config=
* Update Documentation & Code Style
* Feedback
* Move back other_nodes tests into pipeline tests temporarily
* Update Documentation & Code Style
* Fixing tests
* Update Documentation & Code Style
* Fixing ray and standard pipeline tests
* Rename colliding load() methods in dense retrievers and faiss
* Update Documentation & Code Style
* Fix mypy on ray.py as well
* Add check for no root node
* Fix tests to use load_from_directory and load_index
* Try to workaround the disabled add_node of RayPipeline
* Update Documentation & Code Style
* Fix Ray test
* Fix FAISS tests
* Relax class check in _add_node_to_pipeline_graph
* Update Documentation & Code Style
* Try to fix mypy in ray.py
* unused import
* Try another fix for Ray
* Fix connector tests
* Update Documentation & Code Style
* Fix ray
* Update Documentation & Code Style
* use BaseComponent.load() in pipelines/base.py
* another round of feedback
* stray BaseComponent.load()
* Update Documentation & Code Style
* Fix FAISS tests too
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: tstadel <60758086+tstadel@users.noreply.github.com>
* remove duplicate imports
* fix ungrouped-imports
* Fix wrong-import-position
* Fix unused-import
* pyproject.toml
* Working on wrong-import-order
* Solve wrong-import-order
* fix Pool import
* Move open_search_index_to_document_store and elasticsearch_index_to_document_store in elasticsearch.py
* remove Converter from modeling
* Fix mypy issues on adaptive_model.py
* create es_converter.py
* remove converter import
* change import path in tests
* Restructure REST API to not rely on global vars from search.apy and improve tests
* Fix openapi generator
* Move variable initialization
* Change type of FilterRequest.filters
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Add BasePipeline.validate_config, BasePipeline.validate_yaml, and some new custom exception classes
* Make error composition work properly
* Clarify typing
* Help mypy a bit more
* Update Documentation & Code Style
* Enable autogenerated docs for Milvus1 and 2 separately
* Revert "Enable autogenerated docs for Milvus1 and 2 separately"
This reverts commit 282be4a78a6e95862a9b4c924fc3dea5ca71e28d.
* Update Documentation & Code Style
* Re-enable 'additionalProperties: False'
* Add pipeline.type to JSON Schema, was somehow forgotten
* Disable additionalProperties on the pipeline properties too
* Fix json-schemas for 1.1.0 and 1.2.0 (should not do it again in the future)
* Cal super in PipelineValidationError
* Improve _read_pipeline_config_from_yaml's error handling
* Fix generate_json_schema.py to include document stores
* Fix json schemas (retro-fix 1.1.0 again)
* Improve custom errors printing, add link to docs
* Add function in BaseComponent to list its subclasses in a module
* Make some document stores base classes abstract
* Add marker 'integration' in pytest flags
* Slighly improve validation of pipelines at load
* Adding tests for YAML loading and validation
* Make custom_query Optional for validation issues
* Fix bug in _read_pipeline_config_from_yaml
* Improve error handling in BasePipeline and Pipeline and add DAG check
* Move json schema generation into haystack/nodes/_json_schema.py (useful for tests)
* Simplify errors slightly
* Add some YAML validation tests
* Remove load_from_config from BasePipeline, it was never used anyway
* Improve tests
* Include json-schemas in package
* Fix conftest imports
* Make BasePipeline abstract
* Improve mocking by making the test independent from the YAML version
* Add exportable_to_yaml decorator to forget about set_config on mock nodes
* Fix mypy errors
* Comment out one monkeypatch
* Fix typing again
* Improve error message for validation
* Add required properties to pipelines
* Fix YAML version for REST API YAMLs to 1.2.0
* Fix load_from_yaml call in load_from_deepset_cloud
* fix HaystackError.__getattr__
* Add super().__init__()in most nodes and docstore, comment set_config
* Remove type from REST API pipelines
* Remove useless init from doc2answers
* Call super in Seq3SeqGenerator
* Typo in deepsetcloud.py
* Fix rest api indexing error mismatch and mock version of JSON schema in all tests
* Working on pipeline tests
* Improve errors printing slightly
* Add back test_pipeline.yaml
* _json_schema.py supports different versions with identical schemas
* Add type to 0.7 schema for backwards compatibility
* Fix small bug in _json_schema.py
* Try alternative to generate json schemas on the CI
* Update Documentation & Code Style
* Make linux CI match autoformat CI
* Fix super-init-not-called
* Accidentally committed file
* Update Documentation & Code Style
* fix test_summarizer_translation.py's import
* Mock YAML in a few suites, split and simplify test_pipeline_debug_and_validation.py::test_invalid_run_args
* Fix json schema for ray tests too
* Update Documentation & Code Style
* Reintroduce validation
* Usa unstable version in tests and rest api
* Make unstable support the latest versions
* Update Documentation & Code Style
* Remove needless fixture
* Make type in pipeline optional in the strings validation
* Fix schemas
* Fix string validation for pipeline type
* Improve validate_config_strings
* Remove type from test p[ipelines
* Update Documentation & Code Style
* Fix test_pipeline
* Removing more type from pipelines
* Temporary CI patc
* Fix issue with exportable_to_yaml never invoking the wrapped init
* rm stray file
* pipeline tests are green again
* Linux CI now needs .[all] to generate the schema
* Bugfixes, pipeline tests seems to be green
* Typo in version after merge
* Implement missing methods in Weaviate
* Trying to avoid FAISS tests from running in the Milvus1 test suite
* Fix some stray test paths and faiss index dumping
* Fix pytest markers list
* Temporarily disable cache to be able to see tests failures
* Fix pyproject.toml syntax
* Use only tmp_path
* Fix preprocessor signature after merge
* Fix faiss bug
* Fix Ray test
* Fix documentation issue by removing quotes from faiss type
* Update Documentation & Code Style
* use document properly in preprocessor tests
* Update Documentation & Code Style
* make preprocessor capable of handling documents
* import document
* Revert support for documents in preprocessor, do later
* Fix bug in _json_schema.py that was breaking validation
* re-enable cache
* Update Documentation & Code Style
* Simplify calling _json_schema.py from the CI
* Remove redundant ABC inheritance
* Ensure exportable_to_yaml works only on implementations
* Rename subclass to class_ in Meta
* Make run() and get_config() abstract in BasePipeline
* Revert unintended change in preprocessor
* Move outgoing_edges_input_node check inside try block
* Rename VALID_CODE_GEN_INPUT_REGEX into VALID_INPUT_REGEX
* Add check for a RecursionError on validate_config_strings
* Address usages of _pipeline_config in data silo and elasticsearch
* Rename _pipeline_config into _init_parameters
* Fix pytest marker and remove unused imports
* Remove most redundant ABCs
* Rename _init_parameters into _component_configuration
* Remove set_config and type from _component_configuration's dict
* Remove last instances of set_config and replace with super().__init__()
* Implement __init_subclass__ approach
* Simplify checks on the existence of _component_configuration
* Fix faiss issue
* Dynamic generation of node schemas & weed out old schemas
* Add debatable test
* Add docstring to debatable test
* Positive diff between schemas implemented
* Improve diff printing
* Rename REST API YAML files to trigger IDE validation
* Fix typing issues
* Fix more typing
* Typo in YAML filename
* Remove needless type:ignore
* Add tests
* Fix tests & validation feedback for accessory classes in custom nodes
* Refactor RAGeneratorType out
* Fix broken import in conftest
* Improve source error handling
* Remove unused import in test_eval.py breaking tests
* Fix changed error message in tests matches too
* Normalize generate_openapi_specs.py and generate_json_schema.py in the actions
* Fix path to generate_openapi_specs.py in autoformat.yml
* Update Documentation & Code Style
* Add test for FAISSDocumentStore-like situations (superclass with init params)
* Update Documentation & Code Style
* Fix indentation
* Remove commented set_config
* Store model_name_or_path in FARMReader to use in DistillationDataSilo
* Rename _component_configuration into _component_config
* Update Documentation & Code Style
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Remove invalid-envvar-default and logging-too-many-args
* Remove import-self, access-member-before-definition and deprecated-argument
* Remove used-before-assignment by restructuring type import
* Remove unneeded-not
* Silence unnecessary-lambda (it's necessary)
* Remove pointless-string-statement
* Update Documentation & Code Style
* Silenced unsupported-membership-test (probably a real bug, can't fix though)
* Remove trailing-newlines
* Remove super-init-not-called and slience invalid-sequence-index (it's valid)
* Remove invalid-envvar-default in ui
* Remove some more warnings from pyproject.toml than actually solrted in code, CI will fail
* Linting all modules together is more readable
* Update Documentation & Code Style
* Typo in pylint disable comment
* Simplify long boolean statement
* Simplify init call in FAISS
* Fix inconsistent-return-statements
* Fix useless-super-delegation
* Fix useless-else-on-loop
* Fix another inconsistent-return-statements
* Move back pylint disable comment moved by black
* Fix consider-using-set-comprehension
* Fix another consider-using-set-comprehension
* Silence non-parent-init-called
* Update pylint exclusion list
* Update Documentation & Code Style
* Resolve unnecessary-else-after-break
* Fix superfluous-parens
* Fix no-else-break
* Remove is_correctly_retrieved along with its pylint issue
* Update exclusions list
* Silence constructor issue in squad_data.py (method is already broken)
* Fix too-many-return-statements
* Fix use-dict-literal
* Fix consider-using-from-import and useless-object-inheritance
* Update exclusion list
* Fix simplifiable-if-statements
* Fix one consider-using-dict-items
* Fix another consider-using-dict-items
* Fix a third consider-using-dict-items
* Fix last consider-using-dict-items
* Fix three use-a-generator
* Silence import errors on numba, tensorboardX and apex, but add comments & logs
* Fix couple of mypy issues
* Fix another typing issue
* Silence mypy, was conflicting with more meaningful pylint issue
* Fix no-else-continue
* Silence unsubscriptable-object and fix an import error with importlib.metadata
* Update Documentation & Code Style
* Fix all no-else-raise
* Update Documentation & Code Style
* Fix inverted parameters in simplified if switch
* Change [test] to [all] in some jobs (for typing and linting)
* Add comment in haystack/schema.py on pydantic's dataclasses
* Move comment from get_documents_by_id into _convert_weaviate_result_to_document in weaviate.py
* Add comment on pylint silencing
* Fix bug introduced rest_api/controller/search.py
* Update Documentation & Code Style
* Add ADR about Pydantic dataclasses
* Update pydantic-dataclasses.md
* Add link to Pydantic docs on Dataclasses
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* move commandline args to global conftest
* correct test exclude paths
* Update Documentation & Code Style
* exclude test_generator_pipeline_with_translator from windows ci
* exclude further oom tests
* enable log_cli
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Make mypy check also ui and rest_api, fix ui
* Remove explicit type packages from extras, mypy now downloads them
* Make pylint and mypy run on every file except tests
* Rename tasks
* Change cache key
* Fix mypy errors in rest_api
* Normalize python versions to avoid cache misses
* Add all exclusions to make pylint pass
* Run mypy on rest_api and ui as well
* test if installing the package really changes outcome
* Comment out installation of packages
* Experiment: randomize tests
* Add fallback installation steps on cache misses
* Remove randomization
* Add comment on cache
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Fist attempt at using setup.cfg for dependency management
* Trying the new package on the CI and in Docker too
* Add composite extras_require
* Add the safe_import function for document store imports and add some try-catch statements on rest_api and ui imports
* Fix bug on class import and rephrase error message
* Introduce typing for optional modules and add type: ignore in sparse.py
* Include importlib_metadata backport for py3.7
* Add colab group to extra_requires
* Fix pillow version
* Fix grpcio
* Separate out the crawler as another extra
* Make paths relative in rest_api and ui
* Update the test matrix in the CI
* Add try catch statements around the optional imports too to account for direct imports
* Never mix direct deps with self-references and add ES deps to the base install
* Refactor several paths in tests to make them insensitive to the execution path
* Include tstadel review and re-introduce Milvus1 in the tests suite, to fix
* Wrap pdf conversion utils into safe_import
* Update some tutorials and rever Milvus1 as default for now, see #2067
* Fix mypy config
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
