* 'os' wrapper to function for brownfield support
* Changing function names and fixing default parameter values
* Including parameter keys
* Update Documentation & Code Style
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Add BasePipeline.validate_config, BasePipeline.validate_yaml, and some new custom exception classes
* Make error composition work properly
* Clarify typing
* Help mypy a bit more
* Update Documentation & Code Style
* Enable autogenerated docs for Milvus1 and 2 separately
* Revert "Enable autogenerated docs for Milvus1 and 2 separately"
This reverts commit 282be4a78a6e95862a9b4c924fc3dea5ca71e28d.
* Update Documentation & Code Style
* Re-enable 'additionalProperties: False'
* Add pipeline.type to JSON Schema, was somehow forgotten
* Disable additionalProperties on the pipeline properties too
* Fix json-schemas for 1.1.0 and 1.2.0 (should not do it again in the future)
* Cal super in PipelineValidationError
* Improve _read_pipeline_config_from_yaml's error handling
* Fix generate_json_schema.py to include document stores
* Fix json schemas (retro-fix 1.1.0 again)
* Improve custom errors printing, add link to docs
* Add function in BaseComponent to list its subclasses in a module
* Make some document stores base classes abstract
* Add marker 'integration' in pytest flags
* Slighly improve validation of pipelines at load
* Adding tests for YAML loading and validation
* Make custom_query Optional for validation issues
* Fix bug in _read_pipeline_config_from_yaml
* Improve error handling in BasePipeline and Pipeline and add DAG check
* Move json schema generation into haystack/nodes/_json_schema.py (useful for tests)
* Simplify errors slightly
* Add some YAML validation tests
* Remove load_from_config from BasePipeline, it was never used anyway
* Improve tests
* Include json-schemas in package
* Fix conftest imports
* Make BasePipeline abstract
* Improve mocking by making the test independent from the YAML version
* Add exportable_to_yaml decorator to forget about set_config on mock nodes
* Fix mypy errors
* Comment out one monkeypatch
* Fix typing again
* Improve error message for validation
* Add required properties to pipelines
* Fix YAML version for REST API YAMLs to 1.2.0
* Fix load_from_yaml call in load_from_deepset_cloud
* fix HaystackError.__getattr__
* Add super().__init__()in most nodes and docstore, comment set_config
* Remove type from REST API pipelines
* Remove useless init from doc2answers
* Call super in Seq3SeqGenerator
* Typo in deepsetcloud.py
* Fix rest api indexing error mismatch and mock version of JSON schema in all tests
* Working on pipeline tests
* Improve errors printing slightly
* Add back test_pipeline.yaml
* _json_schema.py supports different versions with identical schemas
* Add type to 0.7 schema for backwards compatibility
* Fix small bug in _json_schema.py
* Try alternative to generate json schemas on the CI
* Update Documentation & Code Style
* Make linux CI match autoformat CI
* Fix super-init-not-called
* Accidentally committed file
* Update Documentation & Code Style
* fix test_summarizer_translation.py's import
* Mock YAML in a few suites, split and simplify test_pipeline_debug_and_validation.py::test_invalid_run_args
* Fix json schema for ray tests too
* Update Documentation & Code Style
* Reintroduce validation
* Usa unstable version in tests and rest api
* Make unstable support the latest versions
* Update Documentation & Code Style
* Remove needless fixture
* Make type in pipeline optional in the strings validation
* Fix schemas
* Fix string validation for pipeline type
* Improve validate_config_strings
* Remove type from test p[ipelines
* Update Documentation & Code Style
* Fix test_pipeline
* Removing more type from pipelines
* Temporary CI patc
* Fix issue with exportable_to_yaml never invoking the wrapped init
* rm stray file
* pipeline tests are green again
* Linux CI now needs .[all] to generate the schema
* Bugfixes, pipeline tests seems to be green
* Typo in version after merge
* Implement missing methods in Weaviate
* Trying to avoid FAISS tests from running in the Milvus1 test suite
* Fix some stray test paths and faiss index dumping
* Fix pytest markers list
* Temporarily disable cache to be able to see tests failures
* Fix pyproject.toml syntax
* Use only tmp_path
* Fix preprocessor signature after merge
* Fix faiss bug
* Fix Ray test
* Fix documentation issue by removing quotes from faiss type
* Update Documentation & Code Style
* use document properly in preprocessor tests
* Update Documentation & Code Style
* make preprocessor capable of handling documents
* import document
* Revert support for documents in preprocessor, do later
* Fix bug in _json_schema.py that was breaking validation
* re-enable cache
* Update Documentation & Code Style
* Simplify calling _json_schema.py from the CI
* Remove redundant ABC inheritance
* Ensure exportable_to_yaml works only on implementations
* Rename subclass to class_ in Meta
* Make run() and get_config() abstract in BasePipeline
* Revert unintended change in preprocessor
* Move outgoing_edges_input_node check inside try block
* Rename VALID_CODE_GEN_INPUT_REGEX into VALID_INPUT_REGEX
* Add check for a RecursionError on validate_config_strings
* Address usages of _pipeline_config in data silo and elasticsearch
* Rename _pipeline_config into _init_parameters
* Fix pytest marker and remove unused imports
* Remove most redundant ABCs
* Rename _init_parameters into _component_configuration
* Remove set_config and type from _component_configuration's dict
* Remove last instances of set_config and replace with super().__init__()
* Implement __init_subclass__ approach
* Simplify checks on the existence of _component_configuration
* Fix faiss issue
* Dynamic generation of node schemas & weed out old schemas
* Add debatable test
* Add docstring to debatable test
* Positive diff between schemas implemented
* Improve diff printing
* Rename REST API YAML files to trigger IDE validation
* Fix typing issues
* Fix more typing
* Typo in YAML filename
* Remove needless type:ignore
* Add tests
* Fix tests & validation feedback for accessory classes in custom nodes
* Refactor RAGeneratorType out
* Fix broken import in conftest
* Improve source error handling
* Remove unused import in test_eval.py breaking tests
* Fix changed error message in tests matches too
* Normalize generate_openapi_specs.py and generate_json_schema.py in the actions
* Fix path to generate_openapi_specs.py in autoformat.yml
* Update Documentation & Code Style
* Add test for FAISSDocumentStore-like situations (superclass with init params)
* Update Documentation & Code Style
* Fix indentation
* Remove commented set_config
* Store model_name_or_path in FARMReader to use in DistillationDataSilo
* Rename _component_configuration into _component_config
* Update Documentation & Code Style
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* automatically convert to DeepsetCloudDocumentStore
* shorten info text.
* fix typo
* the -> this
* add test
* ensure request body has only DeepsetCloudDocumentStores
* mark test as elasticsearch to fix milvus1 ci
* update remaining occurences of get_connection
* fix milvus2 import and fix wrong extra references
* change MilvusDocumentStore to Milvus1DocumentStore
* update milvus docstrings to reflect updated dependency management
* enable milvus 2 tests
* fix milvus2 env variable processing
* fix dropping collections for each milvus 2 test
* make Milvus 2 doc store tests work
* allow user to specify consistency level
* Fist attempt at running Milvus2 in the CI
* Install the correct pymilvus
* add batch deletion for milvus2
* change default from milvus 1 to milvus 2
* make milvus2 the default in the docstores extra
* Switch milvus1 and milvus2 in base test run on CI
* Rename docstore flags for pytest: 'milvus'->'milvus1', 'milvus2'->'milvus'
* Rename milvus.py->milvus1.py and milvus2x.py->milvus2.py
* Enable autogenerated docs for Milvus1 and 2 separately
* Partial fix to docstring of Milvus2DocumentStore
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Michel Bartels <kontakt@michelbartels.com>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* add filter classes
* update filter comments
* Add util classes for converting filters (#2123)
* Apply Black
* reintroduce eval functions to filter ops
* Update documentation
* update to latest pymilvus version
* Apply Black
* fixing type hints
* Apply Black
* update write_documents method of milvus2 doc store
* remove unnecessary method
* update init
* remove changes to milvus 2 as they are part of other PR
* remove changes to milvus 2 as they are part of other PR
* updating doc strings to match elastic search filter doc
* Update Documentation & Code Style
* add support for case where there is no meta data defined for key
* update behaviour in case of field not existing in entry
* Update Documentation & Code Style
* add test for InMemoryDocumentStore extended meta data filtering
* make type hint more precise
Co-authored-by: bogdankostic <bogdankostic@web.de>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sara Zan <sarazanzo94@gmail.com>
* update remaining occurences of get_connection
* first commit to add extended metadata filtering support to sql
* fix bugs
* adding sql doc store instead of milvus
* removing updates to milvus2 from other PR
* fixing not operator
* delete left over line
* remove unnecessary import
* Update Documentation & Code Style
* fix circular import
* fix left over merge conflict
* Update Documentation & Code Style
* fix abstract class
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Make YAML files get the same version as Haystack and throw warning at load in case of mismatch
* Update version of most YAMLs in the codebase (aesthethic chamge, only to avoid the warning).
* Remove quotes from version in tests
* Fix version in generate_json_schema.py
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* join node should allow reciprocal rank fusion
* Update Documentation & Code Style
* add missing merging mode
* tuples are immutable
* take correct results from pipeline
* Update Documentation & Code Style
* Simple docstrings, use ValueError
* Use K=60
* Minor refactoring
* precalculate expected result in test
* Update Documentation & Code Style
* refactor to make more clear
* rm unused imports
* tests should test only one thing
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: dmigo <d.f.goryunov@gmail.com>
* move commandline args to global conftest
* correct test exclude paths
* Update Documentation & Code Style
* exclude test_generator_pipeline_with_translator from windows ci
* exclude further oom tests
* enable log_cli
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* pass documents as extra param to eval
* pass documents via labels to eval
* rename param in docs
* Update Documentation & Code Style
* Revert "rename param in docs"
This reverts commit 2f4c2ec79575e9dd33a8300785f789a327df36f4.
* Revert "pass documents via labels to eval"
This reverts commit dcc51e41f2637d093d81c7d193b873c17c36b174.
* simplify iterating through labels and docs
* Update Documentation & Code Style
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Upgrade pydoc-markdown and fix the YAMLs to work with it
* Pin pydoc-markdown to major version
* Generalize pydoc-markdown workflow
* Make a single Action to perform all tasks that require committing into the local branch
* Merge the code updates and the docs in the Linux CI to prevent the bot from always show the pipeline as green
* Installing Jupyter deps for Black
* Build cache before running generation tasks
* Add check not to run the code generation on master
* Simplify push action
* Add more test deps in setup.cfg and remove from GH Action workflow
* Remove forced upgrades on pip install
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Conversion to df does not need initialization
* Apply Black
* fix test case
* Apply Black
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* add filters attribute to labels and use in eval
* Add latest docstring and tutorial changes
* overwrite params if None
* populate filters from Label to MultiLabel
* add query_id in eval df and deepcopy params for each label
* fix mypy
* add test for aggregating filters in multilabel
* use query ids also in answers df
* loop through unique query_ids
* hash filters and query text as id
* Add latest docstring and tutorial changes
* fix top_k reader eval
* Apply Black
* rename query_id to id/multilabel_id
* Apply Black
* json dump filters in dataframe
* add filters and id to wrong_examples()
* Apply Black
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* Testing black on ui/
* Applying black on docstores
* Add latest docstring and tutorial changes
* Create a single GH action for Black and docs to reduce commit noise to the minimum, slightly refactor the OpenAPI action too
* Remove comments
* Relax constraints on pydoc-markdown
* Split temporary black from the docs. Pydoc-markdown was obsolete and needs a separate PR to upgrade
* Fix a couple of bugs
* Add a type: ignore that was missing somehow
* Give path to black
* Apply Black
* Apply Black
* Relocate a couple of type: ignore
* Update documentation
* Make Linux CI run after applying Black
* Triggering Black
* Apply Black
* Remove dependency, does not work well
* Remove manually double trailing commas
* Update documentation
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* Make FileTypeClassifier more flexible
* Make supported_types a init parameter
* Add tests and fix a couple of bugs
* Formatting
* Fix mypy
* Implement feedback
* provide option to recreate es doc store on initialization
* Add latest docstring and tutorial changes
* Label expects more arguments
* Label expects also an answer
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sara Zan <sara.zanzottera@deepset.ai>
* Review changes
* Added the synonym analyser for search fields
* Added the review requests.
* Added the synonyms the OpenSearchDocumentStore and review requests.
* Fist attempt at using setup.cfg for dependency management
* Trying the new package on the CI and in Docker too
* Add composite extras_require
* Add the safe_import function for document store imports and add some try-catch statements on rest_api and ui imports
* Fix bug on class import and rephrase error message
* Introduce typing for optional modules and add type: ignore in sparse.py
* Include importlib_metadata backport for py3.7
* Add colab group to extra_requires
* Fix pillow version
* Fix grpcio
* Separate out the crawler as another extra
* Make paths relative in rest_api and ui
* Update the test matrix in the CI
* Add try catch statements around the optional imports too to account for direct imports
* Never mix direct deps with self-references and add ES deps to the base install
* Refactor several paths in tests to make them insensitive to the execution path
* Include tstadel review and re-introduce Milvus1 in the tests suite, to fix
* Wrap pdf conversion utils into safe_import
* Update some tutorials and rever Milvus1 as default for now, see #2067
* Fix mypy config
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* doc store should return all documents matching ids passed to get_documents_by_id
* test for get_document_by_id should be named correctly
* add test for get_documents_by_id
* Add latest docstring and tutorial changes
* document es query limit
* Add latest docstring and tutorial changes
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
* minimal DCDocumentStore
* support filters
* implement get_documents_by_id
* handle not existing documents
* add docstrings
* auth added
* add tests
* generate docs
* Add latest docstring and tutorial changes
* add responses to dev dependencies
* fix tests
* support query() and quey_by_embedding()
* Add latest docstring and tutorial changes
* query tests added
* read api_key and api_endpoint from env
* Add latest docstring and tutorial changes
* support query() and quey_by_embedding()
* query tests added
* Add latest docstring and tutorial changes
* Add latest docstring and tutorial changes
* support dynamic similarity and return_embedding values
* Add latest docstring and tutorial changes
* adjust KeywordDocumentStore description
* refactoring
* Add latest docstring and tutorial changes
* implement get_document_count and raise on all not implemented methods
* Add latest docstring and tutorial changes
* don't use abbreviation DC in comments and errors
* Add latest docstring and tutorial changes
* docstring added to KeywordDocumentStore
* Add latest docstring and tutorial changes
* enhanced api key set
* split tests into two parts
* change setup.py in order to work around build cache
* added link
* Add latest docstring and tutorial changes
* rename DCDocumentStore to DeepsetCloudDocumentStore
* Add latest docstring and tutorial changes
* remove dc.py
* reinsert link to docs
* fix imports
* Add latest docstring and tutorial changes
* better test structure
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: ArzelaAscoIi <kristof.herrmann@rwth-aachen.de>
* add parameters to allow for different hyperparameters in stage 1 and 2 of tinybert distillation
* Add latest docstring and tutorial changes
* improve default parameters
* Add latest docstring and tutorial changes
* split up distillation method
* Add latest docstring and tutorial changes
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
