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27 Commits

Author SHA1 Message Date
Branden Chan
da97d81305
Change variable names (#1286) 2021-07-14 14:03:34 +02:00
Branden Chan
783893c3d2
Tutorial update (#1166) 
* Add header / footer

* Add Milvus example

* Generate md files

* Fix mypy CI
 2021-06-11 11:09:15 +02:00
Branden Chan
aa6f768efa
Prevent merge of same questions on different documents during evaluation (#1119) 
* Fix duplicate question in Reader.eval()

* Add duplicate question support in document store

* Support duplicate questions in retriever eval

* Update tutorial

* Rename key_tuple

* Change error message

* Add warning when more than 6 labels

* Allow for label grouping options

* Add support for aggregating by label meta

* Satisfy mypy

* Fix duplicate question in Reader.eval()

* Add duplicate question support in document store

* Support duplicate questions in retriever eval

* Update tutorial

* Rename key_tuple

* Change error message

* Add warning when more than 6 labels

* Allow for label grouping options

* Add support for aggregating by label meta

* Satisfy mypy

* Make label field flexible, add docstrings

* Satisfy mypy

* Fix failing tests

* Adjust docstring

* Fix tutorial

Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
 2021-06-02 12:09:03 +02:00
Julian Risch
a7ba146246
Removed comma from last item in json list (#1114) 2021-06-01 12:32:21 +02:00
Julian Risch
40ceaf418a
Fixing grpcio-tools to version of colab's pre-installed grpcio (#1113) 2021-05-31 19:09:10 +02:00
Branden Chan
d77152c469
WIP: Add evaluation nodes for Pipelines (#904) 
* Add main eval fns

* WIP: make pipeline_eval.py run

* Fix typo

* Add support for no_answers

* Add latest docstring and tutorial changes

* Working pipeline eval

* Add timing of nodes

* Add latest docstring and tutorial changes

* Refactor and clean

* Update tutorial script

* Set default params

* Update tutorials

* Fix indent

* Add latest docstring and tutorial changes

* Address mypy issues

* Add test

* Fix mypy error

* Clear outputs

* Add doc strings

* Incorporate reviewer feedback

* Add latest docstring and tutorial changes

* Revert query counting

* Fix typo

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
 2021-04-01 17:35:18 +02:00
Malte Pietsch
e91518ee00
Update tutorials (torch versions, ES version, replace Finder with Pipeline) (#814) 
* remove manual torch install on colab

* update elasticsearch version everywhere to 7.9.2

* fix FAQPipeline

* update tutorials with new pipelines

* Add latest docstring and tutorial changes

* revert faqpipeline change. fix field names in tutorial 4

* Add latest docstring and tutorial changes

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
 2021-02-09 14:56:54 +01:00
Branden Chan
7376185b65
Create DPR training tutorial (#708) 
* WIP: Start DPR training tutorial

* Create basics of DPR Train tutorial

* Update documentation

* Allow DPR to be initialized without document store

* WIP: Add param descriptions to DPR notebook

* Clean tutorial

* Improve loading

* Make doc store optional when loading DPR

* Satisfy mypy type check

* Add links

* Add tutorial header

* Add colab badge

* Clear outputs

* Incorporate reviewer feedback

* WIP: Start DPR training tutorial

* Create basics of DPR Train tutorial

* Update documentation

* Allow DPR to be initialized without document store

* WIP: Add param descriptions to DPR notebook

* Clean tutorial

* Improve loading

* Make doc store optional when loading DPR

* Satisfy mypy type check

* Add links

* Add tutorial header

* Add colab badge

* Clear outputs

* Incorporate reviewer feedback

* Add readme links

* Regenerate tutorials

* Add excitement

* Fix typo

* Fix hard negatives comment

* Wrap tutorial for windows users

* Fix mypy issue
 2021-01-13 10:33:55 +01:00
Malte Pietsch
94b7345505
Make use_gpu=True the default in tutorials (#692) 
* enable gpu args in tutorials

* add info box for gpu runtime on colab
 2020-12-22 07:58:12 +01:00
Branden Chan
e72f4f4299
Update Colab Torch Version (#576) 
* Update torch version

* Update torch version
 2020-11-11 13:55:10 +01:00
Tanay Soni
db4151bbc0
Fix scoring in Elasticsearch for dot product (#517) 2020-10-23 17:50:49 +02:00
bogdankostic
f62117c232
Add urllib version requirement to colab notebooks (#509) 2020-10-23 10:43:58 +02:00
Malte Pietsch
747e0c0046
Bump FARM to 0.4.9. Remove custom torch installation from colab tutorials (#404) 2020-09-21 10:26:12 +02:00
Branden Chan
7fdb85d63a
Create documentation website (#272) 
* Skeleton of doc website

* Flesh out documentation pages

* Split concepts into their own rst files

* add tutorial rsts

* Consistent level 1 markdown headers in tutorials

* Change theme to readthedocs

* Turn bullet points into prose

* Populate sections

* Add more text

* Add more sphinx files

* Add more retriever documentation

* combined all documenations in one structure

* rename of src to _src as it was ignored by git

* Incorporate MP2's changes

* add benchmark bar charts

* Adapt docstrings in Readers

* Improvements to intro, creation of glossary

* Adapt docstrings in Retrievers

* Adapt docstrings in Finder

* Adapt Docstrings of Finder

* Updates to text

* Edit text

* update doc strings

* proof read tutorials

* Edit text

* Edit text

* Add stacked chart

* populate graph with data

* Switch Documentation to markdown (#386)

* add way to generate markdown files to sphinx

* changed from rst to markdown and extended sphinx for it

* fix spelling

* Clean titles

* delete file

* change spelling

* add sections to document store usage

* add basic rest api docs

* fix readme in setup.py

* Update Tutorials

* Change section names

* add windows note to pip install

* update intro

* new renderer for markdown files

* Fix typos

* delete dpr_utils.py

* fix windows note in get started

* Fix docstrings

* deleted rest api docs in api

* fixed typo

* Fix docstring

* revert readme to rst

* Fix readme

* Update setup.py

Co-authored-by: deepset <deepset@Crenolape.localdomain>
Co-authored-by: PiffPaffM <markuspaff.mp@gmail.com>
Co-authored-by: Bogdan Kostić <bogdankostic@web.de>
Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
 2020-09-18 12:57:32 +02:00
Malte Pietsch
9727829cc6
Rename and restructure modules (database, indexing, schemas) (#379) 
* rename database to documentstore

* move document, label, multilabel to haystack/schema.py

* rename documentstore -> document_store

* split indexing modules -> file_converter + preprocessor

* fix order of imports

* Update tutorial notebooks

* fix torch version in tutorial 4
 2020-09-16 18:33:23 +02:00
Malte Pietsch
bde33ddaaa
Bump FARM version to 0.4.8 and PyTorch >=1.5.1, <= 1.6.0 (#376) 
* bump farm version to 0.4.8

* move back to original transformers pipeline

* remove dpr_utils and use transformers implementation

* update tutorial notebooks
 2020-09-16 17:24:40 +02:00
brandenchan
b44b1ac6ec Set top_k_per_candidate 2020-08-26 12:03:56 +02:00
kolk
f2b6cc761b
Refactor DPR from FB to Transformers codebase (#308) 
* change_HFBertEncoder to transformers DPREncoder

* Removed BertTensorizer

* model download relative path

* Refactor model load

* Tutorial5 DPR updated

* fix print_eval_results typo

* copy transformers DPR modules in dpr_utils and test

* transformer v3.0.2 import errors fixed

* remove dependency of DPRConfig on attribute use_return_tuple

* Adjust transformers 302 locally to work with dpr

* projection layer removed from DPR encoders

* fixed mypy errors

* transformers DPR compatible code added

* transformers DPR compatibility added

* bug fix in tutorial 6 notebook

* Docstring update and variable naming issues fix

* tutorial modified to reflect DPR variable naming change

* title addition to passage use-cases handled

* modified handling untitled batch

* resolved mypy errors

* typos in docstrings and comments fixed

* cleaned DPR code and added new test cases

* warnings added for non-bert model [SEP] token removal

* changed warning to logger warning

* title mask creation refactored

* bug fix on cuda issues

* tutorial 6 instantiates modified DPR

* tutorial 5 modified

* tutorial 5 ipython notebook modified: DPR instantiation

* batch_size added to DPR instantiation

* tutorial 5 jupyter notebook typos fixed

* improved docstrings, fixed typos

* Update docstring

Co-authored-by: Timo Moeller <timo.moeller@deepset.ai>
Co-authored-by: Malte Pietsch <malte.pietsch@deepset.ai>
 2020-08-25 20:16:00 +05:30
Branden Chan
a54d6a5bd7
Make Tutorials Work on Colab GPUs (#322) 
* Add pip install torch+cu
 2020-08-19 14:52:50 +02:00
Malte Pietsch
29a15c0d59
Add eval for Dense Passage Retriever & Refactor handling of labels/feedback (#243) 2020-07-31 11:34:06 +02:00
Branden Chan
36867dabac change from top_n_recall to accuracy 2020-07-15 17:05:08 +02:00
Branden Chan
c55477e0ce update eval dataset 2020-07-15 16:14:52 +02:00
Malte Pietsch
fe33a481ad
Update tutorials (#200) 
* fix link in readme. update installation in tutorials

* update haystack version to latest master

* add basic documentation for input to write_documents()

* add docstring for sqldocumentstore

* comment out docker in notebook
 2020-07-07 14:59:01 +02:00
Tanay Soni
71e15a5a11
Update Haystack version in tutorials (#136) 2020-06-08 11:31:12 +02:00
Tanay Soni
ef9e4f4467
Add PDF text extraction (#109) 2020-06-08 11:07:19 +02:00
bogdankostic
479fcb1ace
Fix evaluation (#132) 
* Fix bugs in Tutorial 5

* Adapt tutorials to new metrics
 2020-06-05 18:33:50 +02:00
bogdankostic
bbfccf5cf6
Add Evaluation of Reader, Retriever and Finder (#92) 2020-05-29 15:57:07 +02:00