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98 lines
5.2 KiB
Python
98 lines
5.2 KiB
Python
from haystack.database.elasticsearch import ElasticsearchDocumentStore
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from haystack.indexing.io import fetch_archive_from_http
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from haystack.retriever.elasticsearch import ElasticsearchRetriever
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from haystack.reader.farm import FARMReader
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from haystack.finder import Finder
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from farm.utils import initialize_device_settings
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import logging
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import subprocess
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import time
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LAUNCH_ELASTICSEARCH = False
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device, n_gpu = initialize_device_settings(use_cuda=True)
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# Start an Elasticsearch server
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# You can start Elasticsearch on your local machine instance using Docker. If Docker is not readily available in
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# your environment (eg., in Colab notebooks), then you can manually download and execute Elasticsearch from source.
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if LAUNCH_ELASTICSEARCH:
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logging.info("Starting Elasticsearch ...")
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status = subprocess.run(
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['docker run -d -p 9200:9200 -e "discovery.type=single-node" elasticsearch:7.6.2'], shell=True
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)
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if status.returncode:
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raise Exception("Failed to launch Elasticsearch. If you want to connect to an existing Elasticsearch instance"
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"then set LAUNCH_ELASTICSEARCH in the script to False.")
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time.sleep(30)
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# Download evaluation data, which is a subset of Natural Questions development set containing 50 documents
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doc_dir = "../data/nq"
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s3_url = "https://s3.eu-central-1.amazonaws.com/deepset.ai-farm-qa/datasets/nq_dev_subset.json.zip"
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fetch_archive_from_http(url=s3_url, output_dir=doc_dir)
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# Connect to Elasticsearch
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document_store = ElasticsearchDocumentStore(host="localhost", username="", password="", index="document", create_index=False)
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# Add evaluation data to Elasticsearch database
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document_store.add_eval_data("../data/nq/nq_dev_subset.json")
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# Initialize Retriever
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retriever = ElasticsearchRetriever(document_store=document_store)
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# Initialize Reader
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reader = FARMReader("deepset/roberta-base-squad2")
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# Initialize Finder which sticks together Reader and Retriever
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finder = Finder(reader, retriever)
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# Evaluate Retriever on its own
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retriever_eval_results = retriever.eval()
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## Retriever Recall is the proportion of questions for which the correct document containing the answer is
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## among the correct documents
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print("Retriever Recall:", retriever_eval_results["recall"])
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## Retriever Mean Avg Precision rewards retrievers that give relevant documents a higher rank
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print("Retriever Mean Avg Precision:", retriever_eval_results["mean avg precision"])
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# Evaluate Reader on its own
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reader_eval_results = reader.eval(document_store=document_store, device=device)
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# Evaluation of Reader can also be done directly on a SQuAD-formatted file without passing the data to Elasticsearch
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#reader_eval_results = reader.eval_on_file("../data/natural_questions", "dev_subset.json", device=device)
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## Reader Top-N-Recall is the proportion of predicted answers that overlap with their corresponding correct answer
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print("Reader Top-N-Recall:", reader_eval_results["top_n_recall"])
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## Reader Exact Match is the proportion of questions where the predicted answer is exactly the same as the correct answer
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print("Reader Exact Match:", reader_eval_results["EM"])
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## Reader F1-Score is the average overlap between the predicted answers and the correct answers
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print("Reader F1-Score:", reader_eval_results["f1"])
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# Evaluate combination of Reader and Retriever through Finder
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finder_eval_results = finder.eval()
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print("\n___Retriever Metrics in Finder___")
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print("Retriever Recall:", finder_eval_results["retriever_recall"])
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print("Retriever Mean Avg Precision:", finder_eval_results["retriever_map"])
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# Reader is only evaluated with those questions, where the correct document is among the retrieved ones
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print("\n___Reader Metrics in Finder___")
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print("Reader Top-1 accuracy:", finder_eval_results["reader_top1_accuracy"])
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print("Reader Top-1 accuracy (has answer):", finder_eval_results["reader_top1_accuracy_has_answer"])
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print("Reader Top-k accuracy:", finder_eval_results["reader_top_k_accuracy"])
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print("Reader Top-k accuracy (has answer):", finder_eval_results["reader_topk_accuracy_has_answer"])
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print("Reader Top-1 EM:", finder_eval_results["reader_top1_em"])
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print("Reader Top-1 EM (has answer):", finder_eval_results["reader_top1_em_has_answer"])
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print("Reader Top-k EM:", finder_eval_results["reader_topk_em"])
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print("Reader Top-k EM (has answer):", finder_eval_results["reader_topk_em_has_answer"])
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print("Reader Top-1 F1:", finder_eval_results["reader_top1_f1"])
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print("Reader Top-1 F1 (has answer):", finder_eval_results["reader_top1_f1_has_answer"])
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print("Reader Top-k F1:", finder_eval_results["reader_topk_f1"])
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print("Reader Top-k F1 (has answer):", finder_eval_results["reader_topk_f1_has_answer"])
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print("Reader Top-1 no-answer accuracy:", finder_eval_results["reader_top1_no_answer_accuracy"])
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print("Reader Top-k no-answer accuracy:", finder_eval_results["reader_topk_no_answer_accuracy"])
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# Time measurements
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print("\n___Time Measurements___")
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print("Total retrieve time:", finder_eval_results["total_retrieve_time"])
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print("Avg retrieve time per question:", finder_eval_results["avg_retrieve_time"])
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print("Total reader timer:", finder_eval_results["total_reader_time"])
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print("Avg read time per question:", finder_eval_results["avg_reader_time"])
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print("Total Finder time:", finder_eval_results["total_finder_time"]) |