mirror of
https://github.com/deepset-ai/haystack.git
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337376c81d
* Add batch update of embeddings in document stores * Resolve merge conflict * Remove document ordering dependency in tests * Adjust index buffer size for tests * Adjust ES Scroll Slice * Use generator for document store pagination * Add pagination for InMemoryDocumentStore * Fix missing index parameter in FAISS update_embeddings() * Fix FAISS update_embeddings() * Update FAISS tests * Update eval tests * Revert code formatting change * Fix document count in FAISS update embeddings * Fix vector_ids reset in SQLDocumentStore * Update doctrings * Update docstring
179 lines
6.8 KiB
Python
179 lines
6.8 KiB
Python
import pytest
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from haystack.document_store.base import BaseDocumentStore
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from haystack.preprocessor.preprocessor import PreProcessor
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from haystack.finder import Finder
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@pytest.mark.parametrize("batch_size", [None, 20])
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@pytest.mark.elasticsearch
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def test_add_eval_data(document_store, batch_size):
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# add eval data (SQUAD format)
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document_store.add_eval_data(
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filename="samples/squad/small.json",
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doc_index="haystack_test_eval_document",
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label_index="haystack_test_feedback",
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batch_size=batch_size,
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)
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assert document_store.get_document_count(index="haystack_test_eval_document") == 87
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assert document_store.get_label_count(index="haystack_test_feedback") == 1214
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# test documents
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docs = document_store.get_all_documents(index="haystack_test_eval_document", filters={"name": ["Normans"]})
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assert docs[0].meta["name"] == "Normans"
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assert len(docs[0].meta.keys()) == 1
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# test labels
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labels = document_store.get_all_labels(index="haystack_test_feedback")
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label = None
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for l in labels:
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if l.question == "In what country is Normandy located?":
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label = l
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break
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assert label.answer == "France"
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assert label.no_answer == False
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assert label.is_correct_answer == True
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assert label.is_correct_document == True
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assert label.question == "In what country is Normandy located?"
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assert label.origin == "gold_label"
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assert label.offset_start_in_doc == 159
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# check combination
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doc = document_store.get_document_by_id(label.document_id, index="haystack_test_eval_document")
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start = label.offset_start_in_doc
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end = start + len(label.answer)
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assert doc.text[start:end] == "France"
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@pytest.mark.elasticsearch
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@pytest.mark.parametrize("reader", ["farm"], indirect=True)
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def test_eval_reader(reader, document_store: BaseDocumentStore):
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# add eval data (SQUAD format)
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document_store.add_eval_data(
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filename="samples/squad/tiny.json",
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doc_index="haystack_test_eval_document",
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label_index="haystack_test_feedback",
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)
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assert document_store.get_document_count(index="haystack_test_eval_document") == 2
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# eval reader
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reader_eval_results = reader.eval(
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document_store=document_store,
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label_index="haystack_test_feedback",
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doc_index="haystack_test_eval_document",
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device="cpu",
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)
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assert reader_eval_results["f1"] > 0.65
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assert reader_eval_results["f1"] < 0.67
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assert reader_eval_results["EM"] == 0.5
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assert reader_eval_results["top_n_accuracy"] == 1.0
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@pytest.mark.elasticsearch
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@pytest.mark.parametrize("document_store", ["elasticsearch"], indirect=True)
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@pytest.mark.parametrize("open_domain", [True, False])
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@pytest.mark.parametrize("retriever", ["elasticsearch"], indirect=True)
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def test_eval_elastic_retriever(document_store: BaseDocumentStore, open_domain, retriever):
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# add eval data (SQUAD format)
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document_store.add_eval_data(
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filename="samples/squad/tiny.json",
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doc_index="haystack_test_eval_document",
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label_index="haystack_test_feedback",
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)
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assert document_store.get_document_count(index="haystack_test_eval_document") == 2
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# eval retriever
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results = retriever.eval(
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top_k=1, label_index="haystack_test_feedback", doc_index="haystack_test_eval_document", open_domain=open_domain
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)
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assert results["recall"] == 1.0
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assert results["mrr"] == 1.0
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if not open_domain:
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assert results["map"] == 1.0
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@pytest.mark.elasticsearch
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@pytest.mark.parametrize("document_store", ["elasticsearch"], indirect=True)
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@pytest.mark.parametrize("reader", ["farm"], indirect=True)
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@pytest.mark.parametrize("retriever", ["elasticsearch"], indirect=True)
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def test_eval_finder(document_store: BaseDocumentStore, reader, retriever):
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finder = Finder(reader=reader, retriever=retriever)
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# add eval data (SQUAD format)
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document_store.add_eval_data(
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filename="samples/squad/tiny.json",
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doc_index="haystack_test_eval_document",
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label_index="haystack_test_feedback",
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)
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assert document_store.get_document_count(index="haystack_test_eval_document") == 2
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# eval finder
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results = finder.eval(
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label_index="haystack_test_feedback", doc_index="haystack_test_eval_document", top_k_retriever=1, top_k_reader=5
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)
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assert results["retriever_recall"] == 1.0
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assert results["retriever_map"] == 1.0
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assert abs(results["reader_topk_f1"] - 0.66666) < 0.001
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assert abs(results["reader_topk_em"] - 0.5) < 0.001
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assert abs(results["reader_topk_accuracy"] - 1) < 0.001
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assert results["reader_top1_f1"] <= results["reader_topk_f1"]
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assert results["reader_top1_em"] <= results["reader_topk_em"]
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assert results["reader_top1_accuracy"] <= results["reader_topk_accuracy"]
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# batch eval finder
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results_batch = finder.eval_batch(
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label_index="haystack_test_feedback", doc_index="haystack_test_eval_document", top_k_retriever=1, top_k_reader=5
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)
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assert results_batch["retriever_recall"] == 1.0
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assert results_batch["retriever_map"] == 1.0
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assert results_batch["reader_top1_f1"] == results["reader_top1_f1"]
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assert results_batch["reader_top1_em"] == results["reader_top1_em"]
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assert results_batch["reader_topk_accuracy"] == results["reader_topk_accuracy"]
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@pytest.mark.elasticsearch
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def test_eval_data_split_word(document_store):
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# splitting by word
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preprocessor = PreProcessor(
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clean_empty_lines=False,
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clean_whitespace=False,
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clean_header_footer=False,
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split_by="word",
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split_length=4,
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split_overlap=0,
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split_respect_sentence_boundary=False,
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)
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document_store.add_eval_data(
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filename="samples/squad/tiny.json",
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doc_index="haystack_test_eval_document",
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label_index="haystack_test_feedback",
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preprocessor=preprocessor,
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)
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labels = document_store.get_all_labels_aggregated(index="haystack_test_feedback")
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docs = document_store.get_all_documents(index="haystack_test_eval_document")
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assert len(docs) == 5
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assert len(set(labels[0].multiple_document_ids)) == 2
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@pytest.mark.elasticsearch
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def test_eval_data_split_passage(document_store):
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# splitting by passage
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preprocessor = PreProcessor(
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clean_empty_lines=False,
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clean_whitespace=False,
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clean_header_footer=False,
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split_by="passage",
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split_length=1,
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split_overlap=0,
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split_respect_sentence_boundary=False
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)
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document_store.add_eval_data(
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filename="samples/squad/tiny_passages.json",
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doc_index="haystack_test_eval_document",
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label_index="haystack_test_feedback",
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preprocessor=preprocessor,
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)
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docs = document_store.get_all_documents(index="haystack_test_eval_document")
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assert len(docs) == 2
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assert len(docs[1].text) == 56 |