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c068e34954
* remove deprecated param * Update haystack/nodes/reader/table.py Co-authored-by: Stefano Fiorucci <44616784+anakin87@users.noreply.github.com> * try * remove unused functions and ignore mypy error --------- Co-authored-by: Stefano Fiorucci <44616784+anakin87@users.noreply.github.com>
264 lines
12 KiB
Python
264 lines
12 KiB
Python
import logging
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import pandas as pd
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import pytest
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from haystack.schema import Document, Answer, Span, TableCell
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from haystack.pipelines.base import Pipeline
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from haystack.nodes.reader.table import _calculate_answer_offsets
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@pytest.fixture
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def table_doc1():
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data = {
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"actors": ["brad pitt", "leonardo di caprio", "george clooney"],
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"age": [58, 47, 60],
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"number of movies": [87, 53, 69],
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"date of birth": ["18 december 1963", "11 november 1974", "6 may 1961"],
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}
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return Document(content=pd.DataFrame(data), content_type="table", id="doc1")
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@pytest.fixture
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def table_doc2():
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data = {
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"actors": ["chris pratt", "gal gadot", "oprah winfrey"],
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"age": [45, 36, 65],
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"number of movies": [49, 34, 5],
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"date of birth": ["12 january 1975", "5 april 1980", "15 september 1960"],
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}
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return Document(content=pd.DataFrame(data), content_type="table", id="doc2")
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@pytest.fixture
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def table_doc3():
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data = {
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"Mountain": ["Mount Everest", "K2", "Kangchenjunga", "Lhotse", "Makalu"],
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"Height": ["8848m", "8,611 m", "8 586m", "8 516 m", "8,485m"],
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}
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return Document(content=pd.DataFrame(data), content_type="table", id="doc3")
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@pytest.mark.unit
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def test_calculate_answer_offsets_table_cell(table_doc1):
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offsets_span = _calculate_answer_offsets(answer_coordinates=[(0, 1), (1, 3)])
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assert offsets_span == [TableCell(row=0, col=1), TableCell(row=1, col=3)]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_reader(table_reader_and_param, table_doc1, table_doc2):
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table_reader, param = table_reader_and_param
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query = "When was Di Caprio born?"
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prediction = table_reader.predict(query=query, documents=[table_doc1, table_doc2])
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assert prediction["query"] == "When was Di Caprio born?"
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# Check number of answers
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reference0 = {"tapas_small": {"num_answers": 2}, "rci": {"num_answers": 10}, "tapas_scored": {"num_answers": 6}}
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assert len(prediction["answers"]) == reference0[param]["num_answers"]
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# Check the first answer in the list
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reference1 = {"tapas_small": {"score": 1.0}, "rci": {"score": -6.5301}, "tapas_scored": {"score": 0.50568}}
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assert prediction["answers"][0].score == pytest.approx(reference1[param]["score"], rel=1e-3)
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assert prediction["answers"][0].answer == "11 november 1974"
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assert prediction["answers"][0].offsets_in_context[0].row == 1
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assert prediction["answers"][0].offsets_in_context[0].col == 3
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assert prediction["answers"][0].document_ids == ["doc1"]
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# Check the second answer in the list
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reference2 = {
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"tapas_small": {"answer": "5 april 1980", "row": 1, "col": 3, "score": 0.86314, "doc_id": ["doc2"]},
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"rci": {"answer": "47", "row": 1, "col": 1, "score": -6.836, "doc_id": ["doc1"]},
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"tapas_scored": {"answer": "brad pitt", "row": 0, "col": 0, "score": 0.49078, "doc_id": ["doc1"]},
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}
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assert prediction["answers"][1].score == pytest.approx(reference2[param]["score"], rel=1e-3)
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assert prediction["answers"][1].answer == reference2[param]["answer"]
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assert prediction["answers"][1].offsets_in_context[0].row == reference2[param]["row"]
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assert prediction["answers"][1].offsets_in_context[0].col == reference2[param]["col"]
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assert prediction["answers"][1].document_ids == reference2[param]["doc_id"]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_reader_batch_single_query_single_doc_list(table_reader_and_param, table_doc1, table_doc2):
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table_reader, param = table_reader_and_param
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query = "When was Di Caprio born?"
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prediction = table_reader.predict_batch(queries=[query], documents=[table_doc1, table_doc2])
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# Expected output: List of lists of answers
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assert isinstance(prediction["answers"], list)
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assert isinstance(prediction["answers"][0], list)
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assert isinstance(prediction["answers"][0][0], Answer)
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assert prediction["queries"] == ["When was Di Caprio born?", "When was Di Caprio born?"]
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# Check number of answers for each document
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num_ans_reference = {
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"tapas_small": {"num_answers": [1, 1]},
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"rci": {"num_answers": [10, 10]},
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"tapas_scored": {"num_answers": [3, 3]},
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}
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assert len(prediction["answers"]) == 2
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for i, ans_list in enumerate(prediction["answers"]):
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assert len(ans_list) == num_ans_reference[param]["num_answers"][i]
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# Check first answer from the 1ST document
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score_reference = {"tapas_small": {"score": 1.0}, "rci": {"score": -6.5301}, "tapas_scored": {"score": 0.50568}}
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assert prediction["answers"][0][0].score == pytest.approx(score_reference[param]["score"], rel=1e-3)
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assert prediction["answers"][0][0].answer == "11 november 1974"
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assert prediction["answers"][0][0].offsets_in_context[0].row == 1
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assert prediction["answers"][0][0].offsets_in_context[0].col == 3
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assert prediction["answers"][0][0].document_ids == ["doc1"]
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# Check first answer from the 2ND Document
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ans_reference = {
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"tapas_small": {"answer": "5 april 1980", "row": 1, "col": 3, "score": 0.86314, "doc_id": ["doc2"]},
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"rci": {"answer": "15 september 1960", "row": 2, "col": 3, "score": -7.9429, "doc_id": ["doc2"]},
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"tapas_scored": {"answer": "5", "row": 2, "col": 2, "score": 0.11485, "doc_id": ["doc2"]},
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}
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assert prediction["answers"][1][0].score == pytest.approx(ans_reference[param]["score"], rel=1e-3)
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assert prediction["answers"][1][0].answer == ans_reference[param]["answer"]
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assert prediction["answers"][1][0].offsets_in_context[0].row == ans_reference[param]["row"]
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assert prediction["answers"][1][0].offsets_in_context[0].col == ans_reference[param]["col"]
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assert prediction["answers"][1][0].document_ids == ans_reference[param]["doc_id"]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_reader_batch_single_query_multiple_doc_lists(table_reader_and_param, table_doc1, table_doc2, table_doc3):
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table_reader, param = table_reader_and_param
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query = "When was Di Caprio born?"
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prediction = table_reader.predict_batch(queries=[query], documents=[[table_doc1, table_doc2], [table_doc3]])
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# Expected output: List of lists of answers
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assert isinstance(prediction["answers"], list)
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assert isinstance(prediction["answers"][0], list)
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assert isinstance(prediction["answers"][0][0], Answer)
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assert prediction["queries"] == ["When was Di Caprio born?", "When was Di Caprio born?"]
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# Check number of answers for each document
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num_ans_reference = {
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"tapas_small": {"num_answers": [2, 1]},
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"rci": {"num_answers": [10, 10]},
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"tapas_scored": {"num_answers": [6, 3]},
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}
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assert len(prediction["answers"]) == 2
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for i, ans_list in enumerate(prediction["answers"]):
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assert len(ans_list) == num_ans_reference[param]["num_answers"][i]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_reader_batch_multiple_queries_single_doc_list(table_reader_and_param, table_doc1, table_doc2):
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table_reader, param = table_reader_and_param
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query = "When was Di Caprio born?"
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query2 = "When was Brad Pitt born?"
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prediction = table_reader.predict_batch(queries=[query, query2], documents=[table_doc1, table_doc2])
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# Expected output: List of lists of lists of answers
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assert isinstance(prediction["answers"], list)
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assert isinstance(prediction["answers"][0], list)
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assert isinstance(prediction["answers"][0][0], list)
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assert isinstance(prediction["answers"][0][0][0], Answer)
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assert prediction["queries"] == [
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"When was Di Caprio born?",
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"When was Di Caprio born?",
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"When was Brad Pitt born?",
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"When was Brad Pitt born?",
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]
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# Check number of answers for each document
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num_ans_reference = {
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"tapas_small": {"num_answers": [[1, 1], [1, 1]]},
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"rci": {"num_answers": [[10, 10], [10, 10]]},
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"tapas_scored": {"num_answers": [[3, 3], [3, 3]]},
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}
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assert len(prediction["answers"]) == 2 # Predictions for 2 queries
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for i, ans_list1 in enumerate(prediction["answers"]):
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for j, ans_list2 in enumerate(ans_list1):
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assert len(ans_list2) == num_ans_reference[param]["num_answers"][i][j]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_reader_batch_multiple_queries_multiple_doc_lists(
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table_reader_and_param, table_doc1, table_doc2, table_doc3
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):
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table_reader, param = table_reader_and_param
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query = "When was Di Caprio born?"
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query2 = "Which is the tallest mountain?"
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prediction = table_reader.predict_batch(queries=[query, query2], documents=[[table_doc1, table_doc2], [table_doc3]])
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# Expected output: List of lists answers
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assert isinstance(prediction["answers"], list)
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assert isinstance(prediction["answers"][0], list)
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assert isinstance(prediction["answers"][0][0], Answer)
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assert prediction["queries"] == ["When was Di Caprio born?", "Which is the tallest mountain?"]
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# Check number of answers for each document
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num_ans_reference = {
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"tapas_small": {"num_answers": [2, 1]},
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"rci": {"num_answers": [10, 10]},
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"tapas_scored": {"num_answers": [6, 3]},
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}
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assert len(prediction["answers"]) == 2 # Predictions for 2 collections of documents
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for i, ans_list in enumerate(prediction["answers"]):
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assert len(ans_list) == num_ans_reference[param]["num_answers"][i]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_reader_in_pipeline(table_reader_and_param, table_doc1):
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table_reader, param = table_reader_and_param
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pipeline = Pipeline()
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pipeline.add_node(table_reader, "TableReader", ["Query"])
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query = "When was Di Caprio born?"
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prediction = pipeline.run(query=query, documents=[table_doc1])
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assert prediction["answers"][0].answer == "11 november 1974"
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assert prediction["answers"][0].offsets_in_context[0].row == 1
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assert prediction["answers"][0].offsets_in_context[0].col == 3
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assert prediction["answers"][0].document_ids == ["doc1"]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_base"], indirect=True)
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def test_table_reader_aggregation(table_reader_and_param, table_doc3):
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table_reader, param = table_reader_and_param
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query = "How tall are all mountains on average?"
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prediction = table_reader.predict(query=query, documents=[table_doc3])
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assert prediction["answers"][0].score == pytest.approx(1.0)
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assert prediction["answers"][0].answer == "8609.2 m"
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assert prediction["answers"][0].meta["aggregation_operator"] == "AVERAGE"
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assert prediction["answers"][0].meta["answer_cells"] == ["8848m", "8,611 m", "8 586m", "8 516 m", "8,485m"]
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query = "How tall are all mountains together?"
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prediction = table_reader.predict(query=query, documents=[table_doc3])
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assert prediction["answers"][0].score == pytest.approx(1.0)
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assert prediction["answers"][0].answer == "43046.0 m"
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assert prediction["answers"][0].meta["aggregation_operator"] == "SUM"
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assert prediction["answers"][0].meta["answer_cells"] == ["8848m", "8,611 m", "8 586m", "8 516 m", "8,485m"]
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_table_without_rows(caplog, table_reader_and_param):
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table_reader, param = table_reader_and_param
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# empty DataFrame
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table = pd.DataFrame()
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document = Document(content=table, content_type="table", id="no_rows")
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with caplog.at_level(logging.WARNING):
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predictions = table_reader.predict(query="test", documents=[document])
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assert "Skipping document with id 'no_rows'" in caplog.text
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assert len(predictions["answers"]) == 0
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@pytest.mark.integration
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@pytest.mark.parametrize("table_reader_and_param", ["tapas_small", "rci", "tapas_scored"], indirect=True)
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def test_text_document(caplog, table_reader_and_param):
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table_reader, param = table_reader_and_param
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document = Document(content="text", id="text_doc")
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with caplog.at_level(logging.WARNING):
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predictions = table_reader.predict(query="test", documents=[document])
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assert "Skipping document with id 'text_doc'" in caplog.text
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assert len(predictions["answers"]) == 0
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