ragflow/deepdoc/parser/excel_parser.py

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# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import logging
import re
import sys
from io import BytesIO
import pandas as pd
from openpyxl import Workbook, load_workbook
from rag.nlp import find_codec
# copied from `/openpyxl/cell/cell.py`
ILLEGAL_CHARACTERS_RE = re.compile(r'[\000-\010]|[\013-\014]|[\016-\037]')
class RAGFlowExcelParser:
@staticmethod
def _load_excel_to_workbook(file_like_object):
if isinstance(file_like_object, bytes):
file_like_object = BytesIO(file_like_object)
# Read first 4 bytes to determine file type
file_like_object.seek(0)
file_head = file_like_object.read(4)
file_like_object.seek(0)
if not (file_head.startswith(b'PK\x03\x04') or file_head.startswith(b'\xD0\xCF\x11\xE0')):
logging.info("Not an Excel file, converting CSV to Excel Workbook")
try:
file_like_object.seek(0)
df = pd.read_csv(file_like_object)
return RAGFlowExcelParser._dataframe_to_workbook(df)
except Exception as e_csv:
raise Exception(f"Failed to parse CSV and convert to Excel Workbook: {e_csv}")
try:
return load_workbook(file_like_object,data_only= True)
except Exception as e:
logging.info(f"openpyxl load error: {e}, try pandas instead")
try:
file_like_object.seek(0)
Add fallback to use 'calamine' parse engine in excel_parser.py (#9374) ### What problem does this PR solve? add fallback to `calamine` engine when parse error raised using the default `openpyxl` / `xlrd` engine. e.g. the following error can be fixed: ``` Traceback (most recent call last): File "/ragflow/deepdoc/parser/excel_parser.py", line 53, in _load_excel_to_workbook df = pd.read_excel(file_like_object) File "/ragflow/.venv/lib/python3.10/site-packages/pandas/io/excel/_base.py", line 495, in read_excel io = ExcelFile( File "/ragflow/.venv/lib/python3.10/site-packages/pandas/io/excel/_base.py", line 1567, in __init__ self._reader = self._engines[engine]( File "/ragflow/.venv/lib/python3.10/site-packages/pandas/io/excel/_xlrd.py", line 46, in __init__ super().__init__( File "/ragflow/.venv/lib/python3.10/site-packages/pandas/io/excel/_base.py", line 573, in __init__ self.book = self.load_workbook(self.handles.handle, engine_kwargs) File "/ragflow/.venv/lib/python3.10/site-packages/pandas/io/excel/_xlrd.py", line 63, in load_workbook return open_workbook(file_contents=data, **engine_kwargs) File "/ragflow/.venv/lib/python3.10/site-packages/xlrd/__init__.py", line 172, in open_workbook bk = open_workbook_xls( File "/ragflow/.venv/lib/python3.10/site-packages/xlrd/book.py", line 68, in open_workbook_xls bk.biff2_8_load( File "/ragflow/.venv/lib/python3.10/site-packages/xlrd/book.py", line 641, in biff2_8_load cd.locate_named_stream(UNICODE_LITERAL(qname)) File "/ragflow/.venv/lib/python3.10/site-packages/xlrd/compdoc.py", line 398, in locate_named_stream result = self._locate_stream( File "/ragflow/.venv/lib/python3.10/site-packages/xlrd/compdoc.py", line 429, in _locate_stream raise CompDocError("%s corruption: seen[%d] == %d" % (qname, s, self.seen[s])) xlrd.compdoc.CompDocError: Workbook corruption: seen[2] == 4 ``` ### Type of change - [x] Bug Fix (non-breaking change which fixes an issue)
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try:
df = pd.read_excel(file_like_object)
return RAGFlowExcelParser._dataframe_to_workbook(df)
except Exception as ex:
logging.info(f"pandas with default engine load error: {ex}, try calamine instead")
file_like_object.seek(0)
df = pd.read_excel(file_like_object, engine='calamine')
return RAGFlowExcelParser._dataframe_to_workbook(df)
except Exception as e_pandas:
raise Exception(f"pandas.read_excel error: {e_pandas}, original openpyxl error: {e}")
@staticmethod
def _clean_dataframe(df: pd.DataFrame):
def clean_string(s):
if isinstance(s, str):
return ILLEGAL_CHARACTERS_RE.sub(" ", s)
return s
return df.apply(lambda col: col.map(clean_string))
@staticmethod
def _dataframe_to_workbook(df):
df = RAGFlowExcelParser._clean_dataframe(df)
wb = Workbook()
ws = wb.active
ws.title = "Data"
for col_num, column_name in enumerate(df.columns, 1):
ws.cell(row=1, column=col_num, value=column_name)
for row_num, row in enumerate(df.values, 2):
for col_num, value in enumerate(row, 1):
ws.cell(row=row_num, column=col_num, value=value)
return wb
def html(self, fnm, chunk_rows=256):
file_like_object = BytesIO(fnm) if not isinstance(fnm, str) else fnm
wb = RAGFlowExcelParser._load_excel_to_workbook(file_like_object)
tb_chunks = []
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for sheetname in wb.sheetnames:
ws = wb[sheetname]
rows = list(ws.rows)
if not rows:
continue
tb_rows_0 = "<tr>"
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for t in list(rows[0]):
tb_rows_0 += f"<th>{t.value}</th>"
tb_rows_0 += "</tr>"
for chunk_i in range((len(rows) - 1) // chunk_rows + 1):
tb = ""
tb += f"<table><caption>{sheetname}</caption>"
tb += tb_rows_0
for r in list(
rows[1 + chunk_i * chunk_rows: 1 + (chunk_i + 1) * chunk_rows]
):
tb += "<tr>"
for i, c in enumerate(r):
if c.value is None:
tb += "<td></td>"
else:
tb += f"<td>{c.value}</td>"
tb += "</tr>"
tb += "</table>\n"
tb_chunks.append(tb)
return tb_chunks
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def __call__(self, fnm):
file_like_object = BytesIO(fnm) if not isinstance(fnm, str) else fnm
wb = RAGFlowExcelParser._load_excel_to_workbook(file_like_object)
res = []
for sheetname in wb.sheetnames:
ws = wb[sheetname]
rows = list(ws.rows)
if not rows:
continue
ti = list(rows[0])
for r in list(rows[1:]):
fields = []
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for i, c in enumerate(r):
if not c.value:
continue
t = str(ti[i].value) if i < len(ti) else ""
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t += ("" if t else "") + str(c.value)
fields.append(t)
line = "; ".join(fields)
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if sheetname.lower().find("sheet") < 0:
line += " ——" + sheetname
res.append(line)
return res
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@staticmethod
def row_number(fnm, binary):
if fnm.split(".")[-1].lower().find("xls") >= 0:
wb = RAGFlowExcelParser._load_excel_to_workbook(BytesIO(binary))
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total = 0
for sheetname in wb.sheetnames:
ws = wb[sheetname]
total += len(list(ws.rows))
return total
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if fnm.split(".")[-1].lower() in ["csv", "txt"]:
encoding = find_codec(binary)
txt = binary.decode(encoding, errors="ignore")
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return len(txt.split("\n"))
if __name__ == "__main__":
psr = RAGFlowExcelParser()
psr(sys.argv[1])