### Description
Given all the shell files that now exist in the repo, would be nice to
have linting/formatting around them (in addition to the existing
shellcheck which doesn't do anything to format the shell code). This PR
introduces `shfmt` to both check for changes and apply formatting when
the associated make targets are called.
- Copy script only went through one layer of subdirectory so it did not
found the match between manifest file and structured output. Now edited
to search all subdirectories.
- `set -e` causes the script to exit at any exit rather than `exit 0`,
fix all scripts that needs to run the copy script to be `set +e` right
before the check diff, then back to `set -e` after
- Edit the default evaluation metrics output from `metrics` to
`metrics-tmp` to account for diff check
- Add a script that checks the differences between old eval metric
output (metrics) and new eval metrics output (metrics-tmp)
- parametrize the output folder paths and expected output folder paths
in comparison scripts
- now allow user to use env `OUTPUT_ROOT` to control where the output
and expected output is
- currently assumes output from test and expected output are in the same
directory; this may need separation later
## test
run
```bash
OUTPUT_ROOT=/tmp ./test_unstructured_ingest/test-ingest-src.sh
```
and it should show files changed but not able to show diff since there
is no expected output content at `OUTPUT_ROOT`.
Then run
```bash
cp -R test_unstructured_ingest/expected-* /tmp/
OUTPUT_ROOT=/tmp ./test_unstructured_ingest/test-ingest-src.sh
```
we can see (due to CI and local instance producing different results)
actual line by line diff
**Executive Summary**
This PR adds the evaluation metrics to our current workflow. It verifies
the flow that when the code is pushed, the code will gets evaluate
against our gold standard and output into `.tsv` file.
**Technical Details**
- Adds evaluation metrics to the test-ingest workflow
- Make use of `structured-output` from `test-ingest` and compare to the
gold-standard uploaded in s3, and download into local when make
comparison. The current folder in-use is
`s3://utic-dev-tech-fixtures/small-cct`. This dir is editable in the
shell script.
- With this PR, only one file from one connector is use to compare.
**Misc**
- Not many overlapped files between test-ingest and gold-standard. More
files will be added.
**Outputs**
2 `.tsv` files are saved under `test_unstructured_ingest/metrics/`.
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: Klaijan <Klaijan@users.noreply.github.com>
