Uncomment confluence-diff ingest test to:
- see if the test has consistent results
- keep testing the confluence connector
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
The issue was that for blocks detected in an image such as:
, where the full image is:
https://utic-dev-tech-fixtures.s3.us-east-2.amazonaws.com/pastebin//Users/cragwolfe/tmp/IRS-form-1987.png
, many ListItem's would be extracted that were not adding much value to
the output (assuming the block was determined to be of type List from
the layout model). This particular file is also used in ingest tests,
and you can see the prior output here:
https://github.com/Unstructured-IO/unstructured/blob/483b09b/test_unstructured_ingest/expected-structured-output/azure/IRS-form-1987.png.json#L93-L280
Test Instructions:
1. run the following snippet:
```
import json
import os
from datetime import datetime
from unstructured.__version__ import __version__
from unstructured.partition.auto import partition
from unstructured.staging.base import elements_to_json
filename = "/opt/home/tmp/IRS-form-1987.png"
output_dir = "/opt/home/tmp/json"
base_name_with_ext = os.path.basename(filename)
output_filename_part = os.path.join(output_dir, base_name_with_ext)
print(f"unstructured version: {__version__}")
#for strategy in ("hi_res", "fast", "auto"):
for strategy in ("hi_res",):
d1 = datetime.now()
elements = partition(filename=filename, strategy=strategy)
elems_as_dicts = json.loads(elements_to_json(elements, indent=2))
# strip out metadata for the sake of more readable results
for element_dict in elems_as_dicts:
del element_dict["metadata"]
json_filename=f"{output_filename_part}-{strategy}.json"
with open(json_filename, "w") as jsonf:
jsonf.write(json.dumps(elems_as_dicts, indent=2))
d2 = datetime.now()
print(f"num elements for {strategy}: {len(elements)}")
print(f"time elapsed {strategy}: {(d2-d1).total_seconds()}")
```
updating the `filename` and `output_dir` paths for your particular local
environment.
2. Open the json file that was writen to your `output_dir`, named
IRS-form-1987.png-hi_res.json
Witness the new element:
```
{
"type": "ListItem",
"element_id": "7d3ba328af2c20ddeef5d2c1d270f60f",
"text": "Long-term contracts.\u2014If you are required to change your method of accounting for long-term contracts under section 460, see Notice 87
-61 (9/21/87), 1987-38 IRB 40, for the notification procedures that must be followed Other methods. \u2014Unless the Service has Published a regulation
or procedure to the contrary, all other changes in accounting methods required by the Act are automatically considered to be approved by the Commissio
ner. Examples of method changes automatically approved by the Commissioner are those changes required to effect: (1) the repeal of the reserve method f
or bad debts of taxpayers other than financial institutions (Act section 805); (2) the repeal of the installment method for sales under a revolving cre
dit plan (Act section 812); (3) the Inclusion of income attributable to the sale or furnishing of utility services no later than the year in which the
services were provided to customers (Act section 821); and (4) the repeal of the deduction for qualified discount coupons (Act section 823). Do not fil
e Form 3115 for these changes."
},
```
### Summary
Closes#1184. Updates `partition_html` to respect the ordering of
`<pre>` tags in HTML documents.
### Testing
The elements in the following example should be in the correct order.
```python
from unstructured.partition.html import partition_html
html_text = """
<pre>The Big Brown Bear</pre>
<div>The big brown bear is growling.</div>
<pre>The big brown bear is sleeping.</pre>
<div>The Big Blue Bear</div>
"""
elements = partition_html(text=html_text)
print("\n\n".join([str(el) for el in elements]))
```
### Summary
Address
[#1136](https://github.com/Unstructured-IO/unstructured/issues/1136) for
`hi_res` and `fast` strategies. The `ocr_only` strategy does not include
coordinates.
- add functionality to switch sort mode between the current `basic`
sorting and the new `xy-cut` sorting for `hi_res` and `fast` strategies
- add the script to evaluate the `xy-cut` sorting approach
- add jupyter notebook to provide evaluation and visualization for the
`xy-cut` sorting approach
### Evaluation
```
export PYTHONPATH=.:$PYTHONPATH && python examples/custom-layout-order/evaluate_xy_cut_sorting.py <file_path> <strategy>
```
Here, the file should be under the project root directory. For example,
```
export PYTHONPATH=.:$PYTHONPATH && python examples/custom-layout-order/evaluate_xy_cut_sorting.py example-docs/multi-column-2p.pdf fast
```
- Puts threaded replies into the same text field as parent message,
allowing for a full thread to be under a single element_id
- Output is now XML instead of TXT to allow for easier parsing of new
format.
https://github.com/Unstructured-IO/unstructured/issues/1186
* pip-compile in order to bump unstructured-inference
* Set the default `ocr_mode` back to `enitre_page` now that [this
error](https://github.com/Unstructured-IO/unstructured-inference/pull/183)
is addressed
* Explicitly add `sphinx-tabs` to `build.in`. This file provides
`docs/requirements.txt`.
* Remove a pinned `pydantic` version
* Fix a makefile command to `pip-compile` a missing ingest file.
### Description
Add delta table connector and test against a delta table generated via
delta.io and uploaded to s3. Shows an example of how to use the
connection options to leverage s3.
I was able to get this to work with s3 if I pass in the access and
secret keys as storage options. Even though the s3 bucket being used is
public, would not work without those.
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: rbiseck3 <rbiseck3@users.noreply.github.com>
### Description
* Add ingest test for Notion docs
* Update default cache dir for connectors to include connector name.
Makes debugging the cached content easier.
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: rbiseck3 <rbiseck3@users.noreply.github.com>
Set to individual_blocks for now to work around [this
bug](https://github.com/Unstructured-IO/unstructured-inference/issues/179).
I verified by printing the current ocr_mode in inference. The
`entire_page` default is overridden.
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: awalker4 <awalker4@users.noreply.github.com>
Bump to unstructured-inference==0.5.13, which includes:
Fix extracted image elements being included in layout merge, addresses the issue
where an entire-page image in a PDF was not passed to the layout model when using hi_res.
* add the first version of airtable connector
* change imports as inline to fail gracefully in case of lacking dependency
* parse tables as csv rather than plain text
* add relevant logic to be able to use --airtable-list-of-paths
* add script for creation of reseources for testing, add test script (large) for testing with a large number of tables to validate scroll functionality, update test script (diff) based on the new settings
* fix ingest test names
* add scripts for the large table test
* remove large table test from diff test
* make base and table ids explicit
* add and remove comments
* use -ne instead of !=
* update code based on the recent ingest refactor, update changelog and version
* shellcheck fix
* update comments
* update check-num-rows-and-columns-output error message
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
* update help comments
* update help comments
* update help comments
* update workflows to set auth tokens and to run make install
* add comments on create_scale_test_components
* separate component ids from the test script, add comments to document test component creation
* add LARGE_BASE test, implement LARGE_BASE component creation, replace component id
* shellcheck fixes
* shellcheck fixes
* update docs
* update comment
* bump version
* add wrongly deleted file
* sort columns before saving to process
* Update ingest test fixtures (#1098)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* trigger CI
* trigger CI
* trigger CI
* do not ingest personal spaces in the diff test
* fix argument
* Update ingest test fixtures (#1083)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* add param
* expected test
* add option (to do doc nit)
* test with api for now
* typo
* test with api key
* use local only
* encoding -> partition-encoding
* changelog and version
* Update ingest test fixtures (#1055)
Co-authored-by: yuming-long <yuming-long@users.noreply.github.com>
* ignore coordinates
* no witespace lol
* Update ingest test fixtures (#1061)
Co-authored-by: yuming-long <yuming-long@users.noreply.github.com>
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: yuming-long <yuming-long@users.noreply.github.com>
* add auto_paragraph_grouper. add line break pattern.
* combine group_broken_paragraph and blank_line_grouper function
* fix make check errors
* fix make check errors
* fix make check errors
* fix make check errors
* run make tidy to fix errors
* tidy core.py and text.py
* fix blank-line breaker to extends the result and replace new line with space
* fix function name typo
* call group_broken_paragraphs for blank_line_grouper
* edit function name from one_line_grouper to new_line_grouper for consistency
* edit threshold from 0.5 to 0.1
* edit threshold from 0.5 to 0.1
* Revert "call group_broken_paragraphs for blank_line_grouper"
This reverts commit 8fb93b7aa7c4d7e0320ac1e09c77da44c9b6c7d9.
* revert to commit 8fb93b7 and change threshold from 0.5 to 0.1
* edit test_text assertion. remove all BULLETS_PATTERN.
* Update ingest test fixtures (#1052)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* edit test case in test_xml_partition
* update assertion on test_auto
---------
Co-authored-by: Klaijan Sinteppadon <klaijan@Klaijans-MacBook-Pro.local>
Co-authored-by: Klaijan Sinteppadon <klaijan@klaijans-mbp.mynetworksettings.com>
Co-authored-by: Klaijan Sinteppadon <klaijan@Klaijans-MBP.fios-router.home>
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* feat: add functionality to track emphasized text (`bold/italic` formatting) from paragraph
* chore: add docstring
* chore: fix lint errors
* feat: ignore spaces when extracting emphasized texts from a paragraph
* feat: add functionality to track emphasized text (`bold/italic` formatting) from table
* test: add test case for grabbing emphasized texts from element metadata
* chore: fix lint errors
* chore: update changelog & version
* Update ingest test fixtures (#1047)
* split dependencies by document type
* make pip-compile with new requirements
* add extra requirements to setup.py
* add in all docs; re pip-compile
* extra for all docs
* add pandas to xlsx
* dependency requires for tsv and csv
* handling for doc, docx and odt
* dependency check for pypandoc
* required dependencies for pandoc files
* xml and html
* markdown
* msg
* add in pdf
* add in pptx
* add in excel
* add lxml as base req
* extra all docs for local inference
* local inference installs all
* pin pillow version
* fixes for plain text tests
* fixes for doc
* update make commands
* changelog and version
* add xlrd
* update pip-compile
* pin numpy for python 3.8 support
* more constraints
* contraint on scipy
* update install docs
* constrain ipython
* add outlook to pip-compile
* more ipython constraints
* add extras to dockerfile
* pin office365 client
* few doc tweaks
* types as strings
* last pip-compile
* re pip-comple
* make tidy
* make tidy
* Pull out s3 code as subcommand
* Pull out dropbox code as subcommand
* Pull out azure code as subcommand
* Pull out fsspec code as subcommand
* Pull out github code as subcommand
* Pull out gitlab code as subcommand
* Pull out reddit code as subcommand
* Pull out slack code as subcommand
* Pull out discord code as subcommand
* Pull out wikipedia code as subcommand
* Pull out gdrive code as subcommand
* Pull out biomed code as subcommand
* rename parameters
* Pull out onedrive code as subcommand
* Pull out outlook code as subcommand
* Pull out local code as subcommand
* Pull out elasticsearch code as subcommand
* Pull out confluence code as subcommand
* Drop previous main file
* update changelog
* Add back in mp.Pool
* Fix mypy issues with click
* Make sure all tests run with verbose flag
* refactor approach to dynamically add common options to each subcommand, scrub logging of options for sensitive data
* Pull out some more shared options
* Support running code via python as well as cli
* update ingest readme and move it to the ingest folder
* update usage in connector docs
* move local command arg in test
* Seperate out cli code from logic running unstructured
* Make some cli fields required rather than optional
* rename process -> processor
* Improve logger to avoid duplicate handlers
---------
Co-authored-by: Ryan Nikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
* track tags in html
* pass through links as metadata
* add test for grabbing links
* one more link
* changelog and version
* update docs
* fix tests
* update empty link assertion
* ingest-test-fixtures-update
* Update ingest test fixtures (#961)
* Add confluence connector and an example script
* add test script, add dependency installations
* add authentication secret variables for ci tests and actions
* add dependency installation commands for workflows
* add dependency installation commands for workflows
* Update ingest test fixtures (#907)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* add add ingest test fixtures update workflow for python 3.10, update example script with dummy values
* change workflow name to avoid confusion
* change workflow name to avoid confusion
* only leave 3.8 in ingest test matrix to test consistent partitioning among python versions, remove 3.10 workflow for the test fixtures update
* only leave 3.8 in ingest test matrix to test consistent partitioning among python versions
* Update ingest test fixtures (#911)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* revert back the test python version matrix
* recompile dependencies
* modifications for shellcheck
* update changelog and version
* changelog and version
* remove comments
* Update ingest test fixtures (#915)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* add the option to state the number of spaces to be fetched
* add scroll functionality, expose --confluence-num-of-spaces, --confluence-list-of-spaces and --confluence-num-of-docs-from-each-space to users
* add help message
* add docstrings for two tests, validate grabbing every doc in the fetched spaces, count number of files instead of diffing for confluence2 test
* change test names
* rename connector arg
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
* change arg name for connector
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
* add comment to example
* change arg names
* add new tests to ingest test
* shellcheck remove redundant statement
* Update ingest test fixtures (#932)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* Update ingest test fixtures (#936)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* linting
* change file extensions to parse as html
* Update ingest test fixtures (#943)
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
* remove old fixtures
* update version to 0.8.2-dev3
* change file to trigger CI
* change file to trigger CI
* change file to trigger CI
* change file to trigger CI
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: ahmetmeleq <ahmetmeleq@users.noreply.github.com>
auto strategy was choosing the fast strategy in cases where the pdf contents were just a flat image, resulting in no output. This PR changes the behavior of auto so that elements that can be extracted by fast are extracted, a cursory examination of the elements is made to see if there are elements with text present, and if so then these elements are used as the output. Otherwise fallback strategies come into play.
More deterministic element ordering when using hi_res PDF parsing strategy (from unstructured-inference bump to 0.5.4)
Make large model available (from unstructured-inference bump to 0.5.3)
Combine inferred elements with extracted elements (from unstructured-inference bump to 0.5.2)
---------
Co-authored-by: Roman Isecke <roman@unstructured.io>
Co-authored-by: Crag Wolfe <crag@unstructured.io>
- Adds reusable validation scripts (check-x.sh) to minimize repeated (or near-repeated) code and create one source of truth
- Restructures the location of download and output folders such that they are nested in the test_unstructured_ingest directory
- Adds gitignore for output folders / files to avoid them accidentally getting checked into the repository
- Construct paths as reusable variables declared at top of scripts
- Sort order of flag for ingest calls, across all tests (this makes it easier to parse at a glance)
- OVERWRITE_FIXTURES removes all old fixtures for path to guarantee no stale results are left behind
- Bonus: don't check/exit on expected number of expected outputs when OVERWRITE_FIXTURES is true
- Bonus: exclude file_directory from Slack and Discord test scripts (match convention in all others)
* sets OVERWRITE_FIXTURES to default to false in test-ingest-local-single-file.sh
* fixes incorrect expected results
* update expected results to properly parse Korean text
* bonus: installs language pack for Korean in CI and ingest fixture workflows
Avoid setting metadata in constructor signature for elements because that can lead to unexpected object reuse (and modification).
Bonus refactor for PageBreak to have text values of "".
---------
Co-authored-by: Alan Bertl <alan@unstructured.io>
Co-authored-by: Crag Wolfe <crag@unstructuredai.io>
