8 Commits

Author SHA1 Message Date
Yuming Long
ce40cdc55f
Chore (refactor): support table extraction with pre-computed ocr data (#1801)
### Summary

Table OCR refactor, move the OCR part for table model in inference repo
to unst repo.
* Before this PR, table model extracts OCR tokens with texts and
bounding box and fills the tokens to the table structure in inference
repo. This means we need to do an additional OCR for tables.
* After this PR, we use the OCR data from entire page OCR and pass the
OCR tokens to inference repo, which means we only do one OCR for the
entire document.

**Tech details:**
* Combined env `ENTIRE_PAGE_OCR` and `TABLE_OCR` to `OCR_AGENT`, this
means we use the same OCR agent for entire page and tables since we only
do one OCR.
* Bump inference repo to `0.7.9`, which allow table model in inference
to use pre-computed OCR data from unst repo. Please check in
[PR](https://github.com/Unstructured-IO/unstructured-inference/pull/256).
* All notebooks lint are made by `make tidy`
* This PR also fixes
[issue](https://github.com/Unstructured-IO/unstructured/issues/1564),
I've added test for the issue in
`test_pdf.py::test_partition_pdf_hi_table_extraction_with_languages`
* Add same scaling logic to image [similar to previous Table
OCR](https://github.com/Unstructured-IO/unstructured-inference/blob/main/unstructured_inference/models/tables.py#L109C1-L113),
but now scaling is applied to entire image

### Test
* Not much to manually testing expect table extraction still works
* But due to change on scaling and use pre-computed OCR data from entire
page, there are some slight (better) changes on table output, here is an
comparison on test outputs i found from the same test
`test_partition_image_with_table_extraction`:

screen shot for table in `layout-parser-paper-with-table.jpg`:
<img width="343" alt="expected"
src="https://github.com/Unstructured-IO/unstructured/assets/63475068/278d7665-d212-433d-9a05-872c4502725c">
before refactor:
<img width="709" alt="before"
src="https://github.com/Unstructured-IO/unstructured/assets/63475068/347fbc3b-f52b-45b5-97e9-6f633eaa0d5e">
after refactor:
<img width="705" alt="after"
src="https://github.com/Unstructured-IO/unstructured/assets/63475068/b3cbd809-cf67-4e75-945a-5cbd06b33b2d">

### TODO
(added as a ticket) Still have some clean up to do in inference repo
since now unst repo have duplicate logic, but can keep them as a fall
back plan. If we want to remove anything OCR related in inference, here
are items that is deprecated and can be removed:
*
[`get_tokens`](https://github.com/Unstructured-IO/unstructured-inference/blob/main/unstructured_inference/models/tables.py#L77)
(already noted in code)
* parameter `extract_tables` in inference
*
[`interpret_table_block`](https://github.com/Unstructured-IO/unstructured-inference/blob/main/unstructured_inference/inference/layoutelement.py#L88)
*
[`load_agent`](https://github.com/Unstructured-IO/unstructured-inference/blob/main/unstructured_inference/models/tables.py#L197)
* env `TABLE_OCR` 

### Note
if we want to fallback for an additional table OCR (may need this for
using paddle for table), we need to:
* pass `infer_table_structure` to inference with `extract_tables`
parameter
* stop passing `infer_table_structure` to `ocr.py`

---------

Co-authored-by: Yao You <yao@unstructured.io>
2023-10-21 00:24:23 +00:00
Steve Canny
d9c2516364
fix: chunks break on regex-meta changes and regex-meta start/stop not adjusted (#1779)
**Executive Summary.** Introducing strict type-checking as preparation
for adding the chunk-overlap feature revealed a type mismatch for
regex-metadata between chunking tests and the (authoritative)
ElementMetadata definition. The implementation of regex-metadata aspects
of chunking passed the tests but did not produce the appropriate
behaviors in production where the actual data-structure was different.
This PR fixes these two bugs.

1. **Over-chunking.** The presence of `regex-metadata` in an element was
incorrectly being interpreted as a semantic boundary, leading to such
elements being isolated in their own chunks.

2. **Discarded regex-metadata.** regex-metadata present on the second or
later elements in a section (chunk) was discarded.


**Technical Summary**

The type of `ElementMetadata.regex_metadata` is `Dict[str,
List[RegexMetadata]]`. `RegexMetadata` is a `TypedDict` like `{"text":
"this matched", "start": 7, "end": 19}`.

Multiple regexes can be specified, each with a name like "mail-stop",
"version", etc. Each of those may produce its own set of matches, like:

```python
>>> element.regex_metadata
{
    "mail-stop": [{"text": "MS-107", "start": 18, "end": 24}],
    "version": [
        {"text": "current: v1.7.2", "start": 7, "end": 21},
        {"text": "supersedes: v1.7.0", "start": 22, "end": 40},
    ],
}
```

*Forensic analysis*
* The regex-metadata feature was added by Matt Robinson on 06/16/2023
commit: 4ea71683. The regex_metadata data structure is the same as when
it was added.

* The chunk-by-title feature was added by Matt Robinson on 08/29/2023
commit: f6a745a7. The mistaken regex-metadata data structure in the
tests is present in that commit.

Looks to me like a mis-remembering of the regex-metadata data-structure
and insufficient type-checking rigor (type-checker strictness level set
too low) to warn of the mistake.


**Over-chunking Behavior**

The over-chunking looked like this:

Chunking three elements with regex metadata should combine them into a
single chunk (`CompositeElement` object), subject to maximum size rules
(default 500 chars).

```python
elements: List[Element] = [
    Title(
        "Lorem Ipsum",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="Ipsum", start=6, end=11)]}
        ),
    ),
    Text(
        "Lorem ipsum dolor sit amet consectetur adipiscing elit.",
        metadata=ElementMetadata(
            regex_metadata={"dolor": [RegexMetadata(text="dolor", start=12, end=17)]}
        ),
    ),
    Text(
        "In rhoncus ipsum sed lectus porta volutpat.",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="ipsum", start=11, end=16)]}
        ),
    ),
]

chunks = chunk_by_title(elements)

assert chunks == [
    CompositeElement(
        "Lorem Ipsum\n\nLorem ipsum dolor sit amet consectetur adipiscing elit.\n\nIn rhoncus"
        " ipsum sed lectus porta volutpat."
    )
]
```

Observed behavior looked like this:

```python
chunks => [
    CompositeElement('Lorem Ipsum')
    CompositeElement('Lorem ipsum dolor sit amet consectetur adipiscing elit.')
    CompositeElement('In rhoncus ipsum sed lectus porta volutpat.')
]

```

The fix changed the approach from breaking on any metadata field not in
a specified group (`regex_metadata` was missing from this group) to only
breaking on specified fields (whitelisting instead of blacklisting).
This avoids overchunking every time we add a new metadata field and is
also simpler and easier to understand. This change in approach is
discussed in more detail here #1790.


**Dropping regex-metadata Behavior**

Chunking this section:

```python
elements: List[Element] = [
    Title(
        "Lorem Ipsum",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="Ipsum", start=6, end=11)]}
        ),
    ),
    Text(
        "Lorem ipsum dolor sit amet consectetur adipiscing elit.",
        metadata=ElementMetadata(
            regex_metadata={
                "dolor": [RegexMetadata(text="dolor", start=12, end=17)],
                "ipsum": [RegexMetadata(text="ipsum", start=6, end=11)],
            }
        ),
    ),
    Text(
        "In rhoncus ipsum sed lectus porta volutpat.",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="ipsum", start=11, end=16)]}
        ),
    ),
]
```

..should produce this regex_metadata on the single produced chunk:

```python
assert chunk == CompositeElement(
    "Lorem Ipsum\n\nLorem ipsum dolor sit amet consectetur adipiscing elit.\n\nIn rhoncus"
    " ipsum sed lectus porta volutpat."
)
assert chunk.metadata.regex_metadata == {
    "dolor": [RegexMetadata(text="dolor", start=25, end=30)],
    "ipsum": [
        RegexMetadata(text="Ipsum", start=6, end=11),
        RegexMetadata(text="ipsum", start=19, end=24),
        RegexMetadata(text="ipsum", start=81, end=86),
    ],
}
```

but instead produced this:

```python
regex_metadata == {"ipsum": [{"text": "Ipsum", "start": 6, "end": 11}]}
```

Which is the regex-metadata from the first element only.

The fix was to remove the consolidation+adjustment process from inside
the "list-attribute-processing" loop (because regex-metadata is not a
list) and process regex metadata separately.
2023-10-19 22:16:02 -05:00
Amanda Cameron
f98d5e65ca
chore: adding max_characters to other element type chunking (#1673)
This PR adds the `max_characters` (hard max) param to non-table element
chunking. Additionally updates the `num_characters` metadata to
`max_characters` to make it clearer which param we're referencing.

To test:

```
from unstructured.partition.html import partition_html

filename = "example-docs/example-10k-1p.html"
chunk_elements = partition_html(
        filename,
        chunking_strategy="by_title",
        combine_text_under_n_chars=0,
        new_after_n_chars=50,
        max_characters=100,
    )

for chunk in chunk_elements:
     print(len(chunk.text))

# previously we were only respecting the "soft max" (default of 500) for elements other than tables
# now we should see that all the elements have text fields under 100 chars.
```

---------

Co-authored-by: cragwolfe <crag@unstructured.io>
2023-10-09 19:42:36 +00:00
ryannikolaidis
9960ce5f00
fix: chunking fails with detection_class_prob in metadata (#1637) 2023-10-04 22:14:21 +00:00
Amanda Cameron
1fb464235a
chore: Table chunking (#1540)
This change is adding to our `add_chunking_strategy` logic so that we
are able to chunk Table elements' `text` and `text_as_html` params. In
order to keep the functionality under the same `by_title` chunking
strategy we have renamed the `combine_under_n_chars` to
`max_characters`. It functions the same way for the combining elements
under Title's, as well as specifying a chunk size (in chars) for
TableChunk elements.

*renaming the variable to `max_characters` will also reflect the 'hard
max' we will implement for large elements in followup PRs


Additionally -> some lint changes snuck in when I ran `make tidy` hence
the minor changes in unrelated files :)

TODO:
 add unit tests
--> note: added where I could to unit tests! Some unit tests I just
clarified that the chunking strategy was now 'by_title' because we don't
have a file example that has Table elements to test the
'by_num_characters' chunking strategy
  update changelog

To manually test:
```
In [1]: filename="example-docs/example-10k.html"

In [2]: from unstructured.chunking.title import chunk_table_element

In [3]: from unstructured.partition.auto import partition

In [4]: elements = partition(filename)

# element at -2 happens to be a Table, and we'll get chunks of char size 4 here
In [5]: chunks = chunk_table_element(elements[-2], 4)

# examine text and text_as_html params
ln [6]: for c in chunks:
                    print(c.text)
                    print(c.metadata.text_as_html)
```

---------

Co-authored-by: Yao You <theyaoyou@gmail.com>
2023-10-03 09:40:34 -07:00
Ahmet Melek
bd33a52ee0
fix: coordinates metadata hinders chunking (#1374)
Closes https://github.com/Unstructured-IO/unstructured/issues/1373

This PR: 
- drops the `coordinates` metadata field in `chunk_by_title` to fix
https://github.com/Unstructured-IO/unstructured/issues/1373 (read issue
for the details)
- adds relevant test that checks the particular case
2023-09-14 10:10:03 +00:00
John
c58b261feb
chunk_by_title decorator (#1304)
### Summary

Partial solution to #1185.
Related to #1222.
Creates decorator from `chunk_by_title` cleaning brick.
Breaks a document into sections based on the presence of Title elements.
Also starts a new section under the following conditions:

- If metadata changes, indicating a change in section or page or a
switch to processing attachments. If `multipage_sections=True`, sections
can span pages. `multipage_sections` defaults to True.
- If the length of the section exceeds `new_after_n_chars` characters.
The default is 1500. The **chunking function does not split individual
elements**, so it's possible for a section to exceed that threshold if
an individual element if over `new_after_n_chars characters`, which
could occur with a long NarrativeText element.

Combines sections under these conditions
- Sections under `combine_under_n_chars` characters are combined. The
default is 500.

### Testing

from unstructured.partition.html import partition_html

url = "https://understandingwar.org/backgrounder/russian-offensive-campaign-assessment-august-27-2023-0"
chunks = partition_html(url=url, chunking_strategy="by_title")

for chunk in chunks:
    print(chunk)
    print("\n\n" + "-"*80)
    input()
2023-09-11 21:00:14 +00:00
Matt Robinson
f6a745a74f
feat: chunk elements based on titles (#1222)
### Summary

An initial pass on smart chunking for RAG applications. Breaks a
document into sections based on the presence of `Title` elements. Also
starts a new section under the following conditions:

- If metadata changes, indicating a change in section or page or a
switch to processing attachments. If `multipage_sections=True`, sections
can span pages. `multipage_sections` defaults to True.
- If the length of the section exceeds `new_after_n_chars` characters.
The default is `1500`. The chunking function does not split individual
elements, so it's possible for a section to exceed that threshold if an
individual element if over `new_after_n_chars` characters, which could
occur with a long `NarrativeText` element.
- Section under `combine_under_n_chars` characters are combined. The
default is `500`.

### Testing

```python
from unstructured.partition.html import partition_html
from unstructured.chunking.title import chunk_by_title

url = "https://understandingwar.org/backgrounder/russian-offensive-campaign-assessment-august-27-2023-0"
elements = partition_html(url=url)
chunks = chunk_by_title(elements)

for chunk in chunks:
    print(chunk)
    print("\n\n" + "-"*80)
    input()
```
2023-08-29 16:04:57 +00:00