* Pull out s3 code as subcommand
* Pull out dropbox code as subcommand
* Pull out azure code as subcommand
* Pull out fsspec code as subcommand
* Pull out github code as subcommand
* Pull out gitlab code as subcommand
* Pull out reddit code as subcommand
* Pull out slack code as subcommand
* Pull out discord code as subcommand
* Pull out wikipedia code as subcommand
* Pull out gdrive code as subcommand
* Pull out biomed code as subcommand
* rename parameters
* Pull out onedrive code as subcommand
* Pull out outlook code as subcommand
* Pull out local code as subcommand
* Pull out elasticsearch code as subcommand
* Pull out confluence code as subcommand
* Drop previous main file
* update changelog
* Add back in mp.Pool
* Fix mypy issues with click
* Make sure all tests run with verbose flag
* refactor approach to dynamically add common options to each subcommand, scrub logging of options for sensitive data
* Pull out some more shared options
* Support running code via python as well as cli
* update ingest readme and move it to the ingest folder
* update usage in connector docs
* move local command arg in test
* Seperate out cli code from logic running unstructured
* Make some cli fields required rather than optional
* rename process -> processor
* Improve logger to avoid duplicate handlers
---------
Co-authored-by: Ryan Nikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
- Adds reusable validation scripts (check-x.sh) to minimize repeated (or near-repeated) code and create one source of truth
- Restructures the location of download and output folders such that they are nested in the test_unstructured_ingest directory
- Adds gitignore for output folders / files to avoid them accidentally getting checked into the repository
- Construct paths as reusable variables declared at top of scripts
- Sort order of flag for ingest calls, across all tests (this makes it easier to parse at a glance)
- OVERWRITE_FIXTURES removes all old fixtures for path to guarantee no stale results are left behind
- Bonus: don't check/exit on expected number of expected outputs when OVERWRITE_FIXTURES is true
- Bonus: exclude file_directory from Slack and Discord test scripts (match convention in all others)
Unstructured-ingest biomed connector: Adds max retries, max request time with backoff and decay.
---------
Co-authored-by: Crag Wolfe <crag@unstructuredai.io>
Summary
* Updates "fast" PDF output element ordering to be consistent across Python versions by using the X,Y coordinates of elements extracted
* Added PDFs ingest tests with fast strategy with new script ./test_unstructured_ingest/test-ingest-pdf-fast-reprocess.sh
Updated ingest tests procedure:
* Processing files with hi_res strategy, and preserve downloads to repo files-ingest-download/<ingest_test_name>
* Reprocessing all PDFs with fast strategy from local file files-ingest-download, the partition outputs are stored at expected-structured-output/pdf-fast-reprocess/<ingest_test_name>
Test
* Reproduce tests with ./scripts/ingest-test-fixtures-update.sh , should expect no update. Also don't need any secret tokens since relevant tests won't produce PDFs.
* change strategy arg defalut to auto in partition
* passing --partition-strategy down
* add strategy="hi_res" to test (default changed)
* made an error on param name, added note
Previously, if there was an error (non-zero exit code) in an ingest test script,
the script would still complete and echo a warning about mismatched outputs
and how to regenerate the fixtures. However, this statement is irrelevant and
misleading: if the ingest failed with a non-zero exit code in the first place,
that is the failure that should be debugged -- don't confuse the user with
a comment about outputs.
* Update test fixtures that should have been updated in prior commit
* Disable biomed ingest tests for now, the fail more often than not
* Bonus: echo `tesseract --version` in the update script, since that is a key thing that influences fixture outputs.
- Updates CI to install tesseract version 5.3.0 (better than 4.x in various ways incl. perf.).
- Adds azure expected output fixtures for more useful reference points and as a repro for Some PDF's with scanned images return empty elements #346 .
- Adds a script to regenerate ingest test fixtures that is run in an ubuntu docker container (like CI), with the same version of tesseract. See the comments in scripts/ingest-test-fixtures-update.sh for details.
- Updates expected outputs with above script.
- Updates individual test-ingest scripts to update expected .json output if OVERWRITE_FIXTURES=true.
