**Summary**
The CI workflow for evaluation previously saved the metric outputs to
the `metrics/` folder. Currently structured in subfolders e.g.
`metrics/text-extraction` `metrics/element-type` for the folder clean up
purpose.
Additionally, Azure connector is also added to
`full_python_matrix_tests` in this PR.
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Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: Klaijan <Klaijan@users.noreply.github.com>
### Summary
Click decorated functions cannot (properly) be called outside of the
click interface. This makes it difficult to reuse the setup
functionality in measure_text_edit_distance or
measure_element_type_accuracy. This PR removes the click decoration and
separates it into a wrapper function purely to execute the command.
### Technical Details
- Changed as suggested in [this StackOverflow
post](https://stackoverflow.com/questions/40091347/call-another-click-command-from-a-click-command)
response
- The locations of these now distinct functions are separate: the
`_command` click-decorated functions stay in ingest/evaluate.py, and the
core functions measure_text_edit_distance and
measure_element_type_accuracy are moved into the unstructured/metrics/
folder (which is a more logical location for them).
- Initial test added for measure_text_edit_distance
### Test
`sh ./test_unstructured_ingest/evaluation-metrics.sh text-extraction`
functionality is unchanged.
---------
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: shreyanid <shreyanid@users.noreply.github.com>
Co-authored-by: Trevor Bossert <37596773+tabossert@users.noreply.github.com>
### Summary
To combine ingest and holistic metrics efforts, add the `doctype` field
to the results from the functions in evaluate.py for use in subsequent
aggregation functions.
### Test
Run `sh ./test_unstructured_ingest/evaluation-metrics.sh
text-extraction` and there will be a new doctype column with the file's
doctype extension.
<img width="508" alt="Screenshot 2023-11-01 at 2 23 11 PM"
src="https://github.com/Unstructured-IO/unstructured/assets/42684285/44583da9-e7ef-4142-be72-c2247b954bcf">
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Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: shreyanid <shreyanid@users.noreply.github.com>
Refactor the evaluation scripts including
`unstructured/ingest/evaluation.py`
`test_unstructured_ingest/evaluation-metrics.sh` for more structured
code and usage.
- The script is now only use one python script call with param
- Adds function to build string for output_args (`--output_dir
--output_list) and source_args (`--source_dir --source_args`)
- Now accepts evaluation to call as a param, currently only accepts
`text-extraction` and `element-type`
Example to call the function:
```sh evaluation-metrics.sh text-extraction```
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Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: Klaijan <Klaijan@users.noreply.github.com>
This PR introduces `clean_pdfminer_inner_elements` , which deletes
pdfminer elements inside other detection origins such as YoloX or
detectron.
This function returns the clean document.
Also, the ingest-test fixtures were updated to reflect the new standard
output.
The best way to check that this function is working properly is check
the new test `test_clean_pdfminer_inner_elements` in
`test_unstructured/partition/utils/test_processing_elements.py`
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Co-authored-by: Roman Isecke <roman@unstructured.io>
Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: rbiseck3 <rbiseck3@users.noreply.github.com>
Co-authored-by: Roman Isecke <136338424+rbiseck3@users.noreply.github.com>
### Description
* If the contents of a doc were updated by the process of
reading/downloading it, this was not being persisted. To fix this, the
data being passed around was updated to use a multiprocessing safe dict
rather than the json string. Now that dict is updated after the
`get_file` method is called.
* Wikipedia connector was updated to use a static filename rather than
one requiring a call to fetch data.
* The read config param `re_download` was not being leveraged by the
source node, this was fixed.
* Added fix: chunking and embedding order reversed so chunking runs
before embeddings
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Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: rbiseck3 <rbiseck3@users.noreply.github.com>
**Executive Summary**
This PR adds the evaluation metrics to our current workflow. It verifies
the flow that when the code is pushed, the code will gets evaluate
against our gold standard and output into `.tsv` file.
**Technical Details**
- Adds evaluation metrics to the test-ingest workflow
- Make use of `structured-output` from `test-ingest` and compare to the
gold-standard uploaded in s3, and download into local when make
comparison. The current folder in-use is
`s3://utic-dev-tech-fixtures/small-cct`. This dir is editable in the
shell script.
- With this PR, only one file from one connector is use to compare.
**Misc**
- Not many overlapped files between test-ingest and gold-standard. More
files will be added.
**Outputs**
2 `.tsv` files are saved under `test_unstructured_ingest/metrics/`.
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Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: Klaijan <Klaijan@users.noreply.github.com>
### Description
* Priority of this was to fix deserialization of ingest docs. Currently
the source metadata wasn't being persisted
* To help debug this, source metadata was added to the local ingest doc
as well.
* Unit test added to make sure the metadata itself was persisted.
* As part of serialization, it was forcing docs to fetch source metadata
if it hadn't already to add to the generated dict/json. This shouldn't
have happened if the underlying variable `_source_metadata` was `None`.
This way the doc can be serialized without any calls being made.
* Serialization was moved to the `to_dict` method to make it more
universal.
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Co-authored-by: ryannikolaidis <1208590+ryannikolaidis@users.noreply.github.com>
Co-authored-by: rbiseck3 <rbiseck3@users.noreply.github.com>
