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bd8a74d686
Given the tendency for shell scripts to easily enter into a few levels of indentation and long line lengths, update the default to 2 spaces.
30 lines
1.0 KiB
Bash
Executable File
30 lines
1.0 KiB
Bash
Executable File
#!/usr/bin/env bash
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# Processes the Unstructured-IO/unstructured repository
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# through Unstructured's library in 2 processes.
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# Structured outputs are stored in biomed-ingest-output-api/
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# Biomedical documents can be extracted in one of two ways, in this script is the API approach.
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# Through the OA Web Service API and the parameters provided here: https://www.ncbi.nlm.nih.gov/pmc/tools/oa-service/
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# The format parameter is the only unsupported parameter. Format will always be PDF as .tar.gz files aren't
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# For example, to download documents from 2019-01-02 00:00:00 to 2019-01-02+00:03:10"
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# the parameters "from" and "until" are needed
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SCRIPT_DIR=$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" &>/dev/null && pwd)
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cd "$SCRIPT_DIR"/../../.. || exit 1
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PYTHONPATH=. ./unstructured/ingest/main.py \
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biomed \
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--api-from "2019-01-02" \
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--api-until "2019-01-02+00:03:10" \
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--output-dir biomed-ingest-output-api \
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--num-processes 2 \
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--verbose \
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--preserve-downloads
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# Alternatively, you can call it using:
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# unstructured-ingest --biomed-api ...
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