Steve Canny d9c2516364
fix: chunks break on regex-meta changes and regex-meta start/stop not adjusted (#1779)
**Executive Summary.** Introducing strict type-checking as preparation
for adding the chunk-overlap feature revealed a type mismatch for
regex-metadata between chunking tests and the (authoritative)
ElementMetadata definition. The implementation of regex-metadata aspects
of chunking passed the tests but did not produce the appropriate
behaviors in production where the actual data-structure was different.
This PR fixes these two bugs.

1. **Over-chunking.** The presence of `regex-metadata` in an element was
incorrectly being interpreted as a semantic boundary, leading to such
elements being isolated in their own chunks.

2. **Discarded regex-metadata.** regex-metadata present on the second or
later elements in a section (chunk) was discarded.


**Technical Summary**

The type of `ElementMetadata.regex_metadata` is `Dict[str,
List[RegexMetadata]]`. `RegexMetadata` is a `TypedDict` like `{"text":
"this matched", "start": 7, "end": 19}`.

Multiple regexes can be specified, each with a name like "mail-stop",
"version", etc. Each of those may produce its own set of matches, like:

```python
>>> element.regex_metadata
{
    "mail-stop": [{"text": "MS-107", "start": 18, "end": 24}],
    "version": [
        {"text": "current: v1.7.2", "start": 7, "end": 21},
        {"text": "supersedes: v1.7.0", "start": 22, "end": 40},
    ],
}
```

*Forensic analysis*
* The regex-metadata feature was added by Matt Robinson on 06/16/2023
commit: 4ea71683. The regex_metadata data structure is the same as when
it was added.

* The chunk-by-title feature was added by Matt Robinson on 08/29/2023
commit: f6a745a7. The mistaken regex-metadata data structure in the
tests is present in that commit.

Looks to me like a mis-remembering of the regex-metadata data-structure
and insufficient type-checking rigor (type-checker strictness level set
too low) to warn of the mistake.


**Over-chunking Behavior**

The over-chunking looked like this:

Chunking three elements with regex metadata should combine them into a
single chunk (`CompositeElement` object), subject to maximum size rules
(default 500 chars).

```python
elements: List[Element] = [
    Title(
        "Lorem Ipsum",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="Ipsum", start=6, end=11)]}
        ),
    ),
    Text(
        "Lorem ipsum dolor sit amet consectetur adipiscing elit.",
        metadata=ElementMetadata(
            regex_metadata={"dolor": [RegexMetadata(text="dolor", start=12, end=17)]}
        ),
    ),
    Text(
        "In rhoncus ipsum sed lectus porta volutpat.",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="ipsum", start=11, end=16)]}
        ),
    ),
]

chunks = chunk_by_title(elements)

assert chunks == [
    CompositeElement(
        "Lorem Ipsum\n\nLorem ipsum dolor sit amet consectetur adipiscing elit.\n\nIn rhoncus"
        " ipsum sed lectus porta volutpat."
    )
]
```

Observed behavior looked like this:

```python
chunks => [
    CompositeElement('Lorem Ipsum')
    CompositeElement('Lorem ipsum dolor sit amet consectetur adipiscing elit.')
    CompositeElement('In rhoncus ipsum sed lectus porta volutpat.')
]

```

The fix changed the approach from breaking on any metadata field not in
a specified group (`regex_metadata` was missing from this group) to only
breaking on specified fields (whitelisting instead of blacklisting).
This avoids overchunking every time we add a new metadata field and is
also simpler and easier to understand. This change in approach is
discussed in more detail here #1790.


**Dropping regex-metadata Behavior**

Chunking this section:

```python
elements: List[Element] = [
    Title(
        "Lorem Ipsum",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="Ipsum", start=6, end=11)]}
        ),
    ),
    Text(
        "Lorem ipsum dolor sit amet consectetur adipiscing elit.",
        metadata=ElementMetadata(
            regex_metadata={
                "dolor": [RegexMetadata(text="dolor", start=12, end=17)],
                "ipsum": [RegexMetadata(text="ipsum", start=6, end=11)],
            }
        ),
    ),
    Text(
        "In rhoncus ipsum sed lectus porta volutpat.",
        metadata=ElementMetadata(
            regex_metadata={"ipsum": [RegexMetadata(text="ipsum", start=11, end=16)]}
        ),
    ),
]
```

..should produce this regex_metadata on the single produced chunk:

```python
assert chunk == CompositeElement(
    "Lorem Ipsum\n\nLorem ipsum dolor sit amet consectetur adipiscing elit.\n\nIn rhoncus"
    " ipsum sed lectus porta volutpat."
)
assert chunk.metadata.regex_metadata == {
    "dolor": [RegexMetadata(text="dolor", start=25, end=30)],
    "ipsum": [
        RegexMetadata(text="Ipsum", start=6, end=11),
        RegexMetadata(text="ipsum", start=19, end=24),
        RegexMetadata(text="ipsum", start=81, end=86),
    ],
}
```

but instead produced this:

```python
regex_metadata == {"ipsum": [{"text": "Ipsum", "start": 6, "end": 11}]}
```

Which is the regex-metadata from the first element only.

The fix was to remove the consolidation+adjustment process from inside
the "list-attribute-processing" loop (because regex-metadata is not a
list) and process regex metadata separately.
2023-10-19 22:16:02 -05:00
..
2023-09-23 02:36:22 +00:00