unstructured/test_unstructured_ingest/test-ingest-biomed-api.sh
natygyoon c16862e7b3
feat: add --metadata-include and --metadata-exclude parameters to unstructured-ingest (#368)
* added metadata in/exclude params

* updated process_file

* existing tests

* remove default behavior

* changelog and ci

* line length

* import

* import

* import sorted

* import

* type

* line length

* main

* ci

* json

* dict

* type ignore

* lint

* unit tests for process_file

* lint

* type changed to Optional(str)

* ci

* line length

* added mutex check

* nit
2023-03-22 03:30:53 +09:00

33 lines
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#!/usr/bin/env bash
SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
cd "$SCRIPT_DIR"/.. || exit 1
if [[ "$(find test_unstructured_ingest/expected-structured-output/biomed-ingest-output-api/ -type f -size +10k | wc -l)" != 2 ]]; then
echo "The test fixtures in test_unstructured_ingest/expected-structured-output/biomed-ingest-output-api/ look suspicious. At least one of the files is too small."
echo "Did you overwrite test fixtures with bad outputs?"
exit 1
fi
PYTHONPATH=. ./unstructured/ingest/main.py \
--metadata-exclude filename \
--biomed-api-from "2019-01-02" \
--biomed-api-until "2019-01-02+00:03:10" \
--structured-output-dir biomed-ingest-output-api \
--num-processes 2 \
--verbose \
--download-dir biomed-download-api \
--preserve-downloads
if ! diff -ru biomed-ingest-output-api test_unstructured_ingest/expected-structured-output/biomed-ingest-output-api ; then
echo
echo "There are differences from the previously checked-in structured outputs."
echo
echo "If these differences are acceptable, copy the outputs from"
echo "biomed-ingest-output-api/ to test_unstructured_ingest/expected-structured-output/biomed-ingest-output-api/ after running"
echo
echo "PYTHONPATH=. ./unstructured/ingest/main.py --biomed-api-from '2019-01-02' --biomed-api-until '2019-01-02+00:03:10' --structured-output-dir biomed-ingest-output-api --num-processes 2 --verbose --download-dir biomed-download-api --preserve-downloads"
echo
exit 1
fi