unstructured/test_unstructured_ingest/test-ingest-biomed-api.sh
Roman Isecke 11cdd8d71f
roman/drop downloads in ingest tests (#1614)
### Description
In an effort to mitigate resource consumption when running CI tests,
cleanup download dir for ingest tests after each one.
2023-10-02 20:47:24 +00:00

40 lines
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#!/usr/bin/env bash
# shellcheck disable=SC2317
set -e
SCRIPT_DIR=$(dirname "$(realpath "$0")")
cd "$SCRIPT_DIR"/.. || exit 1
OUTPUT_FOLDER_NAME=biomed-api
OUTPUT_DIR=$SCRIPT_DIR/structured-output/$OUTPUT_FOLDER_NAME
DOWNLOAD_DIR=$SCRIPT_DIR/download/$OUTPUT_FOLDER_NAME
max_processes=${MAX_PROCESSES:=$(python3 -c "import os; print(os.cpu_count())")}
# shellcheck disable=SC1091
source "$SCRIPT_DIR"/cleanup.sh
function cleanup() {
cleanup_dir "$OUTPUT_DIR"
}
trap cleanup EXIT
"$SCRIPT_DIR"/check-num-files-expected-output.sh 2 $OUTPUT_FOLDER_NAME 10k
PYTHONPATH=. ./unstructured/ingest/main.py \
biomed \
--download-dir "$DOWNLOAD_DIR" \
--metadata-exclude coordinates,filename,file_directory,metadata.last_modified,metadata.data_source.date_processed,metadata.detection_class_prob,metadata.parent_id,metadata.category_depth \
--num-processes "$max_processes" \
--strategy hi_res \
--preserve-downloads \
--re-download \
--reprocess \
--output-dir "$OUTPUT_DIR" \
--verbose \
--api-from "2019-01-02" \
--api-until "2019-01-02+00:03:10" \
--decay .3 \
--max-request-time 30 \
--max-retries 5 \
"$SCRIPT_DIR"/check-diff-expected-output.sh $OUTPUT_FOLDER_NAME