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### Description In an effort to mitigate resource consumption when running CI tests, cleanup download dir for ingest tests after each one.
40 lines
1.2 KiB
Bash
Executable File
40 lines
1.2 KiB
Bash
Executable File
#!/usr/bin/env bash
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# shellcheck disable=SC2317
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set -e
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SCRIPT_DIR=$(dirname "$(realpath "$0")")
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cd "$SCRIPT_DIR"/.. || exit 1
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OUTPUT_FOLDER_NAME=biomed-api
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OUTPUT_DIR=$SCRIPT_DIR/structured-output/$OUTPUT_FOLDER_NAME
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DOWNLOAD_DIR=$SCRIPT_DIR/download/$OUTPUT_FOLDER_NAME
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max_processes=${MAX_PROCESSES:=$(python3 -c "import os; print(os.cpu_count())")}
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# shellcheck disable=SC1091
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source "$SCRIPT_DIR"/cleanup.sh
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function cleanup() {
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cleanup_dir "$OUTPUT_DIR"
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}
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trap cleanup EXIT
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"$SCRIPT_DIR"/check-num-files-expected-output.sh 2 $OUTPUT_FOLDER_NAME 10k
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PYTHONPATH=. ./unstructured/ingest/main.py \
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biomed \
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--download-dir "$DOWNLOAD_DIR" \
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--metadata-exclude coordinates,filename,file_directory,metadata.last_modified,metadata.data_source.date_processed,metadata.detection_class_prob,metadata.parent_id,metadata.category_depth \
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--num-processes "$max_processes" \
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--strategy hi_res \
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--preserve-downloads \
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--re-download \
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--reprocess \
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--output-dir "$OUTPUT_DIR" \
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--verbose \
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--api-from "2019-01-02" \
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--api-until "2019-01-02+00:03:10" \
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--decay .3 \
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--max-request-time 30 \
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--max-retries 5 \
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"$SCRIPT_DIR"/check-diff-expected-output.sh $OUTPUT_FOLDER_NAME
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